View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11693_low_3 (Length: 599)
Name: NF11693_low_3
Description: NF11693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11693_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 107 - 580
Target Start/End: Original strand, 12552303 - 12552776
Alignment:
| Q |
107 |
ttcgagagctataaataatgtgannnnnnnnatttgtcttgtaggtggtcgaagattgcagctcatctaccaggacgaacagataacgagataaaaaatt |
206 |
Q |
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| T |
12552303 |
ttcgagagctataaataatgtgattttttttatttgtcttgtagatggtcgaagattgcagctcatctaccaggacgaacagataacgagataaaaaatt |
12552402 |
T |
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| Q |
207 |
attggaacacaaacataaggaaaaagcttctcaagatgggaattgatcctgaaactcacaagccaagaactgattacaatcacctcatgagtctttcaaa |
306 |
Q |
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| T |
12552403 |
attggaacacaaacataaggaaaaagcttctcaagatgggaattgatcctgaaactcacaagccaagaactgattacaatcacctcatgagtctttcaaa |
12552502 |
T |
|
| Q |
307 |
cttacttggcatgtcaaatataggcaatacttttagcaacaaccctcttggtttacaaccagatattacccacctagccaaaatgcaattgttgcaaaat |
406 |
Q |
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| T |
12552503 |
cttacttggcatgtcaaatataggcaatacttttagcaacaaccctcttggtttacaaccagatattacccacctagccaaaatgcaattgttgcaaaat |
12552602 |
T |
|
| Q |
407 |
atgttgcaaattatgaacacaaataattcatttggtaacatgggaaattatccttataaccccttagggaatattaaccctagctttaatccattcaatt |
506 |
Q |
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| T |
12552603 |
atgttgcaaattatgaacacaaataattcatttggtaacatgggaaattatccttataaccccttagggaatattaaccctagctttaatccattcaatt |
12552702 |
T |
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| Q |
507 |
tgtttttgaatggaacaaacacaattcaaactaacgagccattaggtttgagtggtggtgaagaatatgctatg |
580 |
Q |
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| T |
12552703 |
tgtttttgaatggaacaaacacaattcaaactaatgagccattaggtttgagtggtggtgaagaatatgctatg |
12552776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 12552143 - 12552231
Alignment:
| Q |
20 |
atcactctaaagatagcgacggaatttcacagacggaaaaaataatttcgtctctaattccatcactaagtgtt--agacgtcaatttt |
106 |
Q |
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| T |
12552143 |
atcactctaaagatagcgacggaatttcagagacggaaaaaataatttcgtctctaattccatcactaagtgttagagacgtcaatttt |
12552231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 42422690 - 42422618
Alignment:
| Q |
183 |
gaacagataacgagataaaaaattattggaacacaaacataaggaaaaagcttctcaagatgggaattgatcc |
255 |
Q |
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| T |
42422690 |
gaacagacaatgagattaaaaatcattggaacacacacatcaagaaaaagctcattaagatgggaattgatcc |
42422618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 50200060 - 50200020
Alignment:
| Q |
174 |
taccaggacgaacagataacgagataaaaaattattggaac |
214 |
Q |
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| T |
50200060 |
taccaggacgtacagataatgagataaaaaattattggaac |
50200020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 27808566 - 27808608
Alignment:
| Q |
174 |
taccaggacgaacagataacgagataaaaaattattggaacac |
216 |
Q |
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| T |
27808566 |
taccaggaagaacagataatgagataaagaattattggaacac |
27808608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 214
Target Start/End: Original strand, 13344872 - 13344938
Alignment:
| Q |
148 |
taggtggtcgaagattgcagctcatctaccaggacgaacagataacgagataaaaaattattggaac |
214 |
Q |
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| T |
13344872 |
taggtggtcggtgatagcatcacatttaccaggacgaacagataatgagataaagaactattggaac |
13344938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 45675867 - 45675811
Alignment:
| Q |
149 |
aggtggtcgaagattgcagctcatctaccaggacgaacagataacgagataaaaaat |
205 |
Q |
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| T |
45675867 |
aggtggtcgcagattgcagctcagttacctggaagaacagacaatgagataaaaaat |
45675811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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