View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11693_low_4 (Length: 504)

Name: NF11693_low_4
Description: NF11693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11693_low_4
NF11693_low_4
[»] chr1 (4 HSPs)
chr1 (22-486)||(18344933-18345397)
chr1 (33-484)||(18339786-18340237)
chr1 (78-286)||(18303657-18303865)
chr1 (386-472)||(18303480-18303566)


Alignment Details
Target: chr1 (Bit Score: 441; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 22 - 486
Target Start/End: Original strand, 18344933 - 18345397
Alignment:
Q  22 agacagcaccggtccaattaactctagtcagtgtaaaaccagtataccccttcaaatcctccattgatagaagagtcgaaaaataatgctcctctgggta 121  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  18344933 agacagcaccggtccaattaactctagtcagtgtaaaaccagtacaccccttcaaatcctccattgatagaagagtcgaaaaataatgctcctctggata 18345032  T
Q  122 acaataatacttatttgtacatggaatctgaaacttgttccatagcttttgatctctcaacacaacatttgtatgtttccggttcaagataaaaaattgt 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  18345033 acaataatacttatttgtacatggaatctgaaacttgttccatagcttttgatctctcaacacaacctttgtatgtttccggttcaagataaaaaattgt 18345132  T
Q  222 gaaccaacccgaaaatcctcaaatggaacctccggcatcattacattctctccacgagcattatatcgtatattgagattttctgcctctgagagaatct 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18345133 gaaccaacccgaaaatcctcaaatggaacctccggcatcattacattctctccacgagcattataccgtatattgagattttctgcctctgagagaatct 18345232  T
Q  322 caatatagctagggtatagtaggttaaattcagacgaatttgcaaatgattttagttgatttttaaaaaggtagttataaatgaattgaaatgagaagag 421  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18345233 caatatagctagggtacagtaggttaaattcagacgaatttgcaaatgattttagttgatttttaaaaaggtagttataaatgaattgaaatgagaagag 18345332  T
Q  422 cggaatacaacgttgggagataagtgcaaagtattggttcagtgggtcatctaagagggcagatg 486  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18345333 tggaatacaacgttgggagataagtgcaaagtattggttcagtgggtcatctaagagggcagatg 18345397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 33 - 484
Target Start/End: Original strand, 18339786 - 18340237
Alignment:
Q  33 gtccaattaactctagtcagtgtaaaaccagtataccccttcaaatcctccattgatagaagagtcgaaaaataatgctcctctgggtaacaataatact 132  Q
    |||||||||||||| |||||||||||||||||| |||| |||| ||||||||| || | |||||| | |||||||||||| ||||| |||||| ||| |     
T  18339786 gtccaattaactctcgtcagtgtaaaaccagtacacccattcagatcctccatagacaaaagagtgggaaaataatgctcttctggataacaagaatcca 18339885  T
Q  133 tatttgtacatggaatctgaaacttgttccatagcttttgatctctcaacacaacatttgtatgtttccggttcaagataaaaaattgtgaaccaacccg 232  Q
     ||||  ||| |||||| ||||||| ||||||||||| | |||||||| |||||| |||| ||| ||||  |||||||||||||| || |||||||||||    
T  18339886 aatttacacaaggaatccgaaacttcttccatagcttataatctctcaccacaacctttgcatgcttcctattcaagataaaaaactgcgaaccaacccg 18339985  T
Q  233 aaaatcctcaaatggaacctccggcatcattacattctctccacgagcattatatcgtatattgagattttctgcctctgagagaatctcaatatagcta 332  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||| ||||| ||    | ||||||     |||| ||||||||||||||| |||||    
T  18339986 aaaatcctcaaatggaacctccggcaacataacattctctccacgagcgttataacgctcgtagagattcggatcctcagagagaatctcaataaagcta 18340085  T
Q  333 gggtatagtaggttaaattcagacgaatttgcaaatgattttagttgatttttaaaaaggtagttataaatgaattgaaatgagaagagcggaatacaac 432  Q
    ||||| || | |||||| |||||  || | || || ||  |||  ||||||||||||||||||||||||| |||| |||| || |||||||||| |||      
T  18340086 gggtaaagcaagttaaagtcagagaaactcgctaacgacattaactgatttttaaaaaggtagttataaacgaatcgaaacgacaagagcggaacacagt 18340185  T
Q  433 gttgggagataagtgcaaagtattggttcagtgggtcatctaagagggcaga 484  Q
    |||| || |  || |||||||||||||| || || ||||||||||| |||||    
T  18340186 gttgagaaactagggcaaagtattggttaagcggatcatctaagagcgcaga 18340237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 78 - 286
Target Start/End: Complemental strand, 18303865 - 18303657
Alignment:
Q  78 tcctccattgatagaagagtcgaaaaataatgctcctctgggtaacaataatacttatttgtacatggaatctgaaacttgttccatagcttttgatctc 177  Q
    |||||||| ||||||||||||| ||| |||||||| || ||||||||  ||||| ||| | ||||||||||| ||||||| ||||| | |||||||||||    
T  18303865 tcctccatcgatagaagagtcggaaagtaatgctcttccgggtaacaggaatacgtatctatacatggaatccgaaacttcttccacaacttttgatctc 18303766  T
Q  178 tcaacacaacatttgtatgtttccggttcaagataaaaaattgtgaaccaacccgaaaatcctcaaatggaacctccggcatcattacattctctccacg 277  Q
     ||  ||||| |||| |||||||||||||| |||||| ||||| || ||    ||||||||||  |||| |||||||||||||||||||| || ||||||    
T  18303765 gcagaacaacctttgcatgtttccggttcaggataaagaattgcgagcctttgcgaaaatccttgaatgaaacctccggcatcattacatcctttccacg 18303666  T
Q  278 agcattata 286  Q
    |||||||||    
T  18303665 agcattata 18303657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 386 - 472
Target Start/End: Complemental strand, 18303566 - 18303480
Alignment:
Q  386 aaaaaggtagttataaatgaattgaaatgagaagagcggaatacaacgttgggaga-taagtgcaaagtattggttcagtgggtcatc 472  Q
    ||||||| |||||||||  ||| |||| |||||||| ||||||||| ||||||||| |||| ||||||||||||||  ||||||||||    
T  18303566 aaaaagggagttataaacaaatcgaaacgagaagagtggaatacaatgttgggagactaag-gcaaagtattggttatgtgggtcatc 18303480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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