View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11693_low_5 (Length: 455)

Name: NF11693_low_5
Description: NF11693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11693_low_5
NF11693_low_5
[»] chr1 (5 HSPs)
chr1 (45-447)||(9803366-9803768)
chr1 (288-389)||(37738420-37738521)
chr1 (79-159)||(9813710-9813790)
chr1 (67-159)||(9828499-9828591)
chr1 (107-192)||(9824163-9824248)
[»] chr7 (3 HSPs)
chr7 (297-411)||(19814274-19814388)
chr7 (288-401)||(18476614-18476727)
chr7 (288-389)||(3003923-3004024)
[»] chr2 (1 HSPs)
chr2 (288-389)||(23681221-23681322)
[»] chr5 (2 HSPs)
chr5 (288-390)||(36732278-36732380)
chr5 (331-401)||(23885000-23885073)
[»] scaffold0432 (1 HSPs)
scaffold0432 (45-111)||(7033-7099)


Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 45 - 447
Target Start/End: Complemental strand, 9803768 - 9803366
Alignment:
Q  45 aactttggcaagatattatcggaaattcagaggaaaaagaagcacaaaattaagtgggaattggaggttgagatgcttgcataatttgggaaggatcctg 144  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9803768 aactttggcaagatattctcggaaattctgaggaaaaagaagcacaaaattaagtgggaattggaggttgagatgcttgcataatttgggaaggatcctg 9803669  T
Q  145 tgttatgtatgaaggttgtttgcgctatttatcaacaacaaacttctggggaacaggtgatcaagggaacatttttccataacgagcgtggatttaacaa 244  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9803668 tgttatgtatgaaggttgtttgcgctatttatcgacaacaaacttctggggaacaggtgatcaagggaacatttttccgtaacgagcgtggatttaacaa 9803569  T
Q  245 gcatgatgctctcaggtaggaataaaaaatagaattagattcatctagagagatattcatctctagaaatgttatatttcatgaccatatacttccttat 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9803568 gcatgatgctctcaggtaggaataaaaaatagaattagattcatctagagagatattcatctctagaaatgttatatttcatgaccatatacttccttat 9803469  T
Q  345 ccttcttcttctgtgaagaatttggaatattttccattttcttcatctcagtcttctacttcatcatttgtctcccttgaaccatctcccatttcttcat 444  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9803468 ccttcttcttctgtgaagaatttggaatattttccattttcttcatctcagtcttctacttcatcatttgtctcccttgaaccatctcccatttcttcat 9803369  T
Q  445 ctc 447  Q
    |||    
T  9803368 ctc 9803366  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 288 - 389
Target Start/End: Complemental strand, 37738521 - 37738420
Alignment:
Q  288 tctagagagatattcatctctagaaatgttatatttcatgaccatatacttccttatccttcttcttctgtgaagaatttggaatattttccattttctt 387  Q
    |||||||| || || |||||||||||||| || |||||||| ||||| |||||||||||| |||| ||||  |||||||||||||||||||| |||||||    
T  37738521 tctagagaaatctttatctctagaaatgtaatttttcatgatcatattcttccttatcctccttcatctgaaaagaatttggaatattttcctttttctt 37738422  T
Q  388 ca 389  Q
    ||    
T  37738421 ca 37738420  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 79 - 159
Target Start/End: Complemental strand, 9813790 - 9813710
Alignment:
Q  79 aaaagaagcacaaaattaagtgggaattggaggttgagatgcttgcataatttgggaaggatcctgtgttatgtatgaagg 159  Q
    |||||||||| |||||||||||||||| ||||||||| |||| |||| | || || |||||||||||||||||||||||||    
T  9813790 aaaagaagcataaaattaagtgggaatcggaggttgaaatgcgtgcagacttcggaaaggatcctgtgttatgtatgaagg 9813710  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 67 - 159
Target Start/End: Complemental strand, 9828591 - 9828499
Alignment:
Q  67 aaattcagaggaaaaagaagcacaaaattaagtgggaattggaggttgagatgcttgcataatttgggaaggatcctgtgttatgtatgaagg 159  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| |||  |||  | || || |||||||  ||||||||||||||||    
T  9828591 aaattcagaggaaaaagaagcacaaaattaagtgggaatcggaggttgatatgtgtgctgacttcggaaaggatcaagtgttatgtatgaagg 9828499  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 192
Target Start/End: Complemental strand, 9824248 - 9824163
Alignment:
Q  107 ggaggttgagatgcttgcataatttgggaaggatcctgtgttatgtatgaaggttgtttgcgctatttatcaacaacaaacttctg 192  Q
    |||||||||||||| |||| | || || ||||||||||||| ||||||||||| ||| || | | ||| || ||| ||||||||||    
T  9824248 ggaggttgagatgcatgcagacttcggaaaggatcctgtgtaatgtatgaaggctgtatgtgttctttttcgacagcaaacttctg 9824163  T

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Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 297 - 411
Target Start/End: Complemental strand, 19814388 - 19814274
Alignment:
Q  297 atattcatctctagaaatgttatatttcatgaccatatacttccttatccttcttcttctgtgaagaatttggaatattttccattttcttcatctcagt 396  Q
    |||||||| |||| ||||||| | || ||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  19814388 atattcatttctaaaaatgttgttttccatgatcatatacttccttgtccttcttcttttgtgaagaatttggaatattttccattttcttcatctcagt 19814289  T
Q  397 cttctacttcatcat 411  Q
      ||| |||||||||    
T  19814288 tatctccttcatcat 19814274  T

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Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 288 - 401
Target Start/End: Original strand, 18476614 - 18476727
Alignment:
Q  288 tctagagagatattcatctctagaaatgttatatttcatgaccatatacttccttatccttcttcttctgtgaagaatttggaatattttccattttctt 387  Q
    |||||||| |||||||||| ||||||||| || |||||||| ||||| |||||||||||| |||||||  |||||||||||||||| ||||||||||||     
T  18476614 tctagagaaatattcatctatagaaatgtcatctttcatgatcatattcttccttatcctacttcttcaatgaagaatttggaataatttccattttctc 18476713  T
Q  388 catctcagtcttct 401  Q
    ||||||| ||||||    
T  18476714 catctcaatcttct 18476727  T

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Target: chr7; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 288 - 389
Target Start/End: Original strand, 3003923 - 3004024
Alignment:
Q  288 tctagagagatattcatctctagaaatgttatatttcatgaccatatacttccttatccttcttcttctgtgaagaatttggaatattttccattttctt 387  Q
    |||||||| || || |||||||||||||| || |||||||| ||||| |||||||||||| |||| ||||  |||||||||||||||||||| |||||||    
T  3003923 tctagagaaatctttatctctagaaatgtaatttttcatgatcatattcttccttatcctccttcatctgaaaagaatttggaatattttcctttttctt 3004022  T
Q  388 ca 389  Q
    ||    
T  3004023 ca 3004024  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 288 - 389
Target Start/End: Original strand, 23681221 - 23681322
Alignment:
Q  288 tctagagagatattcatctctagaaatgttatatttcatgaccatatacttccttatccttcttcttctgtgaagaatttggaatattttccattttctt 387  Q
    |||||||| || || |||||||||||| | || |||||||| ||||| |||||||||||| |||| ||||  |||||||||||||||||||| |||||||    
T  23681221 tctagagaaatctttatctctagaaatataatttttcatgatcatattcttccttatcctccttcatctgacaagaatttggaatattttcctttttctt 23681320  T
Q  388 ca 389  Q
    ||    
T  23681321 ca 23681322  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 288 - 390
Target Start/End: Complemental strand, 36732380 - 36732278
Alignment:
Q  288 tctagagagatattcatctctagaaatgttatatttcatgaccatatacttccttatccttcttcttctgtgaagaatttggaatattttccattttctt 387  Q
    |||||||| || || || ||||||||||| || |||||||| ||||| |||||||||||| |||| |||   |||||||||||||||||||| |||||||    
T  36732380 tctagagaaatctttatatctagaaatgtaatttttcatgatcatattcttccttatcctccttcatcttaaaagaatttggaatattttcctttttctt 36732281  T
Q  388 cat 390  Q
    |||    
T  36732280 cat 36732278  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 401
Target Start/End: Complemental strand, 23885073 - 23885000
Alignment:
Q  331 atatacttccttatccttcttcttctgtgaagaat---ttggaatattttccattttcttcatctcagtcttct 401  Q
    |||| ||||||||||||||||| |||| |||||||   ||||||||||||||||||||||||  ||||||||||    
T  23885073 atattcttccttatccttcttcatctgagaagaataatttggaatattttccattttcttcacttcagtcttct 23885000  T

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Target: scaffold0432 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 111
Target Start/End: Complemental strand, 7099 - 7033
Alignment:
Q  45 aactttggcaagatattatcggaaattcagaggaaaaagaagcacaaaattaagtgggaattggagg 111  Q
    |||||||| |||| ||||||  ||||||||||||||| ||||||||||||||| |||| | ||||||    
T  7099 aactttggtaagaaattatctaaaattcagaggaaaaggaagcacaaaattaattggggagtggagg 7033  T

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