View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11693_low_8 (Length: 360)
Name: NF11693_low_8
Description: NF11693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11693_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 53565298 - 53565099
Alignment:
| Q |
17 |
cattcaacttgacaacaccacagcgtaaggtttccgatgaacatggatgcttggaatggttggaccaacatgagaattcttcagtagtgtatataagctt |
116 |
Q |
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| T |
53565298 |
cattcaacttgacaacaccacagcgtaaggtttccgatgaacatggatgcttagaatggttggaccaacatgagaattcttcagtagtgtatataagctt |
53565199 |
T |
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| Q |
117 |
tggaagtgtggtaacacccccacctcatgagctcactgcattggcagagtccttagaggaatgcggatttccatttatttggtcctttaggggtgatcct |
216 |
Q |
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| T |
53565198 |
tggaagtgtggtaacacccccacctcatgagctcactgcattggcagagtccttagaggaatgtggatttccatttatttggtcctttaggggtgatcct |
53565099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 269 - 351
Target Start/End: Complemental strand, 53565046 - 53564964
Alignment:
| Q |
269 |
tcgttgcatgggctcctcaagttgaaatccttaaacattcatcggttggtgtgtttttgacgcattctgggtggaattctgtg |
351 |
Q |
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| T |
53565046 |
tcgttgcatgggctcctcaagttgaaatccttaaacattcatcggttggtgtgtttttgacgcattctgggtggaattctgtg |
53564964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 53580088 - 53579907
Alignment:
| Q |
17 |
cattcaacttgacaacaccacagcgtaaggtttccgatgaacatggatgcttggaatggttggaccaacatgagaattcttcagtagtgtatataagctt |
116 |
Q |
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| T |
53580088 |
cattcatcttgacaacaccgcaacgtatggtttctgatgaacatggatgtttagcatggttgaaccaatgtgagaaattctcagttgtgtatattagctt |
53579989 |
T |
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| Q |
117 |
tggaagtgtggtaacacccccacctcatgagctcactgcattggcagagtccttagaggaatgcggatttccatttatttgg |
198 |
Q |
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| T |
53579988 |
cggaagtcggatagtaccaccacctcatgagctcaatgcattggctgagtgtttagaagaatgtggatgtccatttatttgg |
53579907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 344
Target Start/End: Complemental strand, 53579834 - 53579761
Alignment:
| Q |
271 |
gttgcatgggctcctcaagttgaaatccttaaacattcatcggttggtgtgtttttgacgcattctgggtggaa |
344 |
Q |
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| T |
53579834 |
gttgcatgggctcctcaaatggaaatccttaaacactcagctgttggtatgtgtttgacacattctggttggaa |
53579761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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