View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11693_low_9 (Length: 359)
Name: NF11693_low_9
Description: NF11693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11693_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 11 - 345
Target Start/End: Original strand, 8882762 - 8883096
Alignment:
| Q |
11 |
cagagagagctacaatgtctttatcagtgagacccatgcgataaaagatctctcttaaatgtgatgcgcctgaaatataatatatagtttttcatatgat |
110 |
Q |
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| T |
8882762 |
cagagagagctacaatgtctttatcagtgagacccatgcgataaaagatctctcttaaatgtgatgcgcctgaaatataatatatagtttttcatatgat |
8882861 |
T |
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| Q |
111 |
aaatgaaatacttattttaagtaattttgagttaagtttcaagattgaacaacatgatttaattaccttgtttggcatctggaaggcgaccttcttgtgg |
210 |
Q |
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| T |
8882862 |
aaatgaaatacttagtttaagtaattttgagttaagtttcaagattgaacaacatgatttaattaccttgtttggcatctggaaggcgaccttcttgtgg |
8882961 |
T |
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| Q |
211 |
agattctaatgaatcctaattcaaaataaaacacctcatattactactataatagtataataaagatagattgttactgaaatcacgaggctaattaaac |
310 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8882962 |
agattccaatgaatcctaattcaaaataaaacacctcatattactactataatagtataataaagatagattgttactgaaatcatgaggctaattaaac |
8883061 |
T |
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| Q |
311 |
aaagcatgattagtattgcattgaatgatgaatgt |
345 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
8883062 |
aaagcatgattagtattgcattgaatgatgaatgt |
8883096 |
T |
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