View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11694_high_1 (Length: 1000)

Name: NF11694_high_1
Description: NF11694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11694_high_1
NF11694_high_1
[»] chr8 (2 HSPs)
chr8 (110-981)||(45549892-45550763)
chr8 (15-47)||(45550814-45550846)


Alignment Details
Target: chr8 (Bit Score: 836; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 836; E-Value: 0
Query Start/End: Original strand, 110 - 981
Target Start/End: Complemental strand, 45550763 - 45549892
Alignment:
Q  110 aaatgcaactggcacgtccaactttctcggttgacaacaagatgcagagagcaattacaatcactaactctaaggaaaccagaaagataaaagattctca 209  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  45550763 aaatacaactggcacgtccaactttctcggttgacaacaagatgcagagagcaattacaatcaccaactctaaggaaaccaaaaagataaaagattctca 45550664  T
Q  210 gcggaagcgaacatcaactaacactggcagagctgccgacatttcaaaccagatggccgacaagggaaggattccaaacgtaatagccaaactaatggga 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45550663 gcggaagcgaacatcaactaacactggcagagctgccgacatttcaaaccagatggccgacaagggaaggattccaaacgtaatagccaaactaatggga 45550564  T
Q  310 ctggacaaccttcctgagaagaaggtttctggtaattgtaatactgcatcatccaaacactctgccaaaggaagcagcagcaccacactgaagagcaaac 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45550563 ctggacaaccttcctgagaagaaggtttctggtaattgtaatactgcatcatccaaacactctgccaaaggaagcagcagcaccacactgaagagcaaac 45550464  T
Q  410 aaacagacaatttgatcaaaaaccaaaaagtggctgttggatccttcaaaaccatgatgtttggtggtccagataaaaatttggtcctccaaaaccaaaa 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45550463 aaacagacaatttgatcaaaaaccaaaaagtggctgttggatccttcaaaaccatgatgtttggtggtccagataaaaatttggtcctccaaaaccaaaa 45550364  T
Q  510 gtctgcctattactctgaatctgaggtggttggaataaaagcattgaagggctttgacaaggccagcatcatcaactattctgctcgtcaaaattatgtt 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45550363 gtctgcctattactctgaatctgaggtggttggaataaaagcattgaagggctttgacaaggccagcatcatcaactattctgctcgtcaaaattatgtt 45550264  T
Q  610 gaggtgatgatgggaaggaaacaggatcacccacataacagtggcacagtaaaggatagaagcataaatggcaatgatccatttcataatctaaataaca 709  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  45550263 gaggtgctgatgggaaggaaacaggatcacccacataacagtggcacagtaaaggacagaagcataaatggcaatgatccatttcataatctaaataaca 45550164  T
Q  710 tgcacgaaagaagatcacaagttaaacctgccattcaaattgcaaaggaaggacaaacaatcacaaacaagcatattaagatgagcaatgaaaagaagtc 809  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  45550163 tgcacgaaagaagatcacaagttaaacctgccattcaaattgcaaaagaaggacaaacaatcacagacaagcatattaagatgagcaatgaaaagaagtc 45550064  T
Q  810 tcgggaccatatcgtggttcaaaagtcaattatctccaaagacagagggagagaaatgacacccaggaattcatcaaaacaatccaccattaatcttcag 909  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45550063 tcgggaccatatcgtggttcaaaagtcaattatctccaaagacggagggagagaaatgacacccaggaattcatcaaaacaatccaccattaatcttcag 45549964  T
Q  910 aagaagaagaggcaatcattcataaaccaacccacaccgttcaagatatcacgtggtgatctagatatagtc 981  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45549963 aagaagaagaagcaatcattcataaaccaacccacaccgttcaagatatcacgtggtgatctagatatagtc 45549892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 45550846 - 45550814
Alignment:
Q  15 agcacagaacaaaaatcgaatcacactattaga 47  Q
    |||||||||||||||||||||||||||||||||    
T  45550846 agcacagaacaaaaatcgaatcacactattaga 45550814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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