View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11694_high_16 (Length: 325)
Name: NF11694_high_16
Description: NF11694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11694_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 42578329 - 42578019
Alignment:
| Q |
1 |
aggggttagtgttgtgagggtagttgtagttccgatgactagttccgaggacaagcccagcagacttgatgatatctagttgagactaataatacctggt |
100 |
Q |
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| T |
42578329 |
aggggttagtgttgtgagggtagttgtagttccgatgactagttccgaggacaagctcagcagacttgatgatatctagttgagactaataatacctggt |
42578230 |
T |
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| Q |
101 |
ggttccttccatctttttctattggtaa----acagtcttgataaatgtattaaagtcgagttgatgaagaaaatctgcttatcctatcacattgtatat |
196 |
Q |
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| T |
42578229 |
ggttccttccatctttttctattggtaacctaacagtcttgataaatgtattaaagtcgagttgatgaagaaaatctgcttatcctatcacattgtatat |
42578130 |
T |
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| Q |
197 |
taagctcatctctttcctttctttatttctccctaatcttaatataattggactcaaacagaactatcaacttataagctggacccattatccttctacc |
296 |
Q |
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| T |
42578129 |
taagctcatctctttcctttctttatttctccctaatcttaatataattggactcaaacagaactatcaacttataagctggaccaattatccttctaac |
42578030 |
T |
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| Q |
297 |
aagtctctaag |
307 |
Q |
| |
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||||||||||| |
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| T |
42578029 |
aagtctctaag |
42578019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 97
Target Start/End: Complemental strand, 42571077 - 42571038
Alignment:
| Q |
58 |
cagcagacttgatgatatctagttgagactaataatacct |
97 |
Q |
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| T |
42571077 |
cagcagacttgttgatatctagttgagactaataatacct |
42571038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 274
Target Start/End: Complemental strand, 42570866 - 42570831
Alignment:
| Q |
239 |
tataattggactcaaacagaactatcaacttataag |
274 |
Q |
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| T |
42570866 |
tataattggactcaaacagaactatcaaattataag |
42570831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 42608517 - 42608469
Alignment:
| Q |
226 |
tccctaatcttaatataattggactcaaacagaactatcaacttataag |
274 |
Q |
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||||| |||||||||||| | || ||||||||||||||||| ||||||| |
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| T |
42608517 |
tccctcatcttaatataactagattcaaacagaactatcaagttataag |
42608469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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