View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11694_high_2 (Length: 619)
Name: NF11694_high_2
Description: NF11694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11694_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 50 - 603
Target Start/End: Complemental strand, 33948980 - 33948427
Alignment:
| Q |
50 |
gttccaaccaaagatgctaaagttaccgggtaggtgacagattgagcacgaaggtaaatcctaattggttgaagaaaagaattagtaacaagatcaggta |
149 |
Q |
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| T |
33948980 |
gttccaaccaaagatgctaaagttaccgggtaggtgacagattgagcacgaaggtaaatcctaattggttgaagaaaagaattagtaacaagatcaggta |
33948881 |
T |
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| Q |
150 |
acaaaaacacaagataagtttgtgacatttgggtgattttatcatcttgatgtaaaaaatgaaagattctagacatattaaaccatagaaaagaaatggg |
249 |
Q |
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| T |
33948880 |
acaaaaacacaagataagtttgtgacatttgggtgattttatcatcttgatgtaaaaaatgaaagattctagacatattaaaccatagaaaagaaatggg |
33948781 |
T |
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| Q |
250 |
taaagaacatgataagaggaagattatacaccgttgaagtgttaatgatagaagttttggacggttagcaccaaaagcttgagaacaaagaggttccata |
349 |
Q |
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| T |
33948780 |
taaagaacatgataagaggaagattatacaccgttgaagtgttaatgatagaagttttggacggttagcaccaaaggcttgagaacaaagaggttccata |
33948681 |
T |
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| Q |
350 |
cctaaagataaaccagaaagaactgaataaccggttatgtttgcaaaagctatggctaatgaacctgatgcaagttccacatcaccaagtttaccaagaa |
449 |
Q |
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| T |
33948680 |
cctaaagataaaccagaaagaactgaataaccggttatgtttgcaaaagctatggctaatgaacctgatgcaagttccacatcaccaagtttaccaagaa |
33948581 |
T |
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| Q |
450 |
acatcatagatatcatggaacgtgcatagaagattagtgctgttagtgctgttggtaaagctaatgataatagagattttgtttcactaactatgatgtc |
549 |
Q |
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| T |
33948580 |
acatcatagatatcatggaacgtgcatagaagattagtgctgttagtgctgttggtaaagctaatgataatagagattttgtttcactaactatgatgtc |
33948481 |
T |
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| Q |
550 |
tctttgattttccatgtctttggaaatcattggttcgtttaaggtattgatctt |
603 |
Q |
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| T |
33948480 |
tctttgattttccatgtctttggaaatcattggttcgtttaaggtattgatctt |
33948427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 281 - 426
Target Start/End: Original strand, 43102758 - 43102903
Alignment:
| Q |
281 |
cgttgaagtgttaatgatagaagttttggacggttagcaccaaaagcttgagaacaaagaggttccatacctaaagataaaccagaaagaactgaataac |
380 |
Q |
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| T |
43102758 |
cgttgaagtgttaaggataggagtttaggacggtttgctccgaaggcttgtgaacagagaggttccattccgagagagagaccggagagaactgagtagc |
43102857 |
T |
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| Q |
381 |
cggttatgtttgcaaaagctatggctaatgaacctgatgcaagttc |
426 |
Q |
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| T |
43102858 |
cggtgatgttggcgaaggcgatggcgagtgaaccggctgcaagttc |
43102903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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