View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11694_high_22 (Length: 286)
Name: NF11694_high_22
Description: NF11694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11694_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 112 - 271
Target Start/End: Original strand, 20778282 - 20778441
Alignment:
| Q |
112 |
gtggagatagaaggaaacatagaaatcatgttccactatttattaactttatatatggaaatgtaaaggggtcatgtcacattcaaaccatggctcattt |
211 |
Q |
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| T |
20778282 |
gtggagatagaaggaaacatagaaatcatgttccactatttattaactttatatatgcaaatgtaaaggggtcatgtcacattcaaaccatggctcattt |
20778381 |
T |
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| Q |
212 |
gtgctcttcctggagagtagggaccatataccacgagtagcacgacttgagtgaacaaaa |
271 |
Q |
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| T |
20778382 |
gtgctcttcctggagagtagggaccatataccacgagtagcacgacttgagttaacaaaa |
20778441 |
T |
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Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 20778171 - 20778231
Alignment:
| Q |
1 |
aagatagttataagagactggtggtacaatgatgattagaatatggtttatttgtttggct |
61 |
Q |
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| T |
20778171 |
aagatagttataagagactggtggtacaatgatgattagaatatggtttatttgtttggct |
20778231 |
T |
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