View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11694_high_3 (Length: 594)
Name: NF11694_high_3
Description: NF11694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11694_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 482; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 41 - 587
Target Start/End: Original strand, 44155063 - 44155597
Alignment:
| Q |
41 |
taccctcattcttcttcgtgacttattgtgagagatccgttgaattccttacacttgtgaattaatttggtgtttctttgattctctcatttaaatatgc |
140 |
Q |
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| T |
44155063 |
taccctcattcttcttcgtgacttattgtgagagatccgttgaattccttacacttgtgaattaatttggtgtttctttgattctctcatttaaatatgc |
44155162 |
T |
|
| Q |
141 |
atacaggcatgagtgttaatattaattctatcgaatcttgtgctacaagtcatgttgcaattaacactaaaaatgaatgaagtgattgtagagaatcgag |
240 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
44155163 |
atacaggcatgagtgttaatattaattctatcgaatcttgtgctacaagtcatgttgagattaacactaaaaatgaatgaagtgattgtagagaatcgag |
44155262 |
T |
|
| Q |
241 |
tgatgcaggcttctatgaaaatttaatttccaaaataatcctttactcaataagtttacgttgttatttgtttcaatgttatatatctagcaagaataac |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
44155263 |
tgatgcaggcttctatgaaaatttaatttccaaaataatcctttactcaataagtttacggtgttatttgtttcaatgttatacatctagcaagaataac |
44155362 |
T |
|
| Q |
341 |
tatcgctgcattaagtgtttatgcttttatgtggccggtatttctagtcctgcttcttaatagttttactctcactctgatttgcaggtgtctggaggaa |
440 |
Q |
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| T |
44155363 |
tatcgctgcattaagtgtttatgcttttatgtggccggtatttctagtcctgcttcttaatagttttactctcactctgatttgcaggtgtctggaggaa |
44155462 |
T |
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| Q |
441 |
ggagcagagtttttctattgaagccagtcaagttgtcaggtgtcaagtgcttgaaagagttcatcatgagaggtgaagtgaaagttggtgaggaaagttt |
540 |
Q |
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| T |
44155463 |
ggagcagagtt------------ccagtcaagttgtcaggtgtcaagtgcttgaaagagttcatcatgagaggtgaagtgaaagttggtgaggaaagttt |
44155550 |
T |
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| Q |
541 |
tttgaaaagaatgcgatcatcagataagtgcagttcatctctctcga |
587 |
Q |
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| T |
44155551 |
tttgaaaagaatgcgatcatcagataagtgcagtttatctctatcga |
44155597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 345 - 473
Target Start/End: Complemental strand, 40894457 - 40894330
Alignment:
| Q |
345 |
gctgcattaagtgtttatgcttttatgtggccggtatttctagtcctgcttcttaatagttttactctcactctgatttgcaggtgtctggaggaaggag |
444 |
Q |
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| T |
40894457 |
gctgcattaagtgtttatgcttttatgtggccaatatttctagtcatgcttcttaatagttttactctca--ctgatttgcaggtgcctggaggaaggag |
40894360 |
T |
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| Q |
445 |
caga-gtttttctattgaagccagtcaagt |
473 |
Q |
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| T |
40894359 |
cagaggtttttctattgaagccagtcaagt |
40894330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 360 - 565
Target Start/End: Original strand, 44214434 - 44214638
Alignment:
| Q |
360 |
tatgcttttatgtggccggtatttctagtcctgcttcttaatagttttactctcactctgatttgcaggtgtctggaggaaggagcagagt-ttttctat |
458 |
Q |
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|||||| ||| |||||| |||| || |||||||||||||||||||||| | ||||| |||||||||||| ||||||||||||||||| |||| | | |
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| T |
44214434 |
tatgctattaggtggccagtatatcctgtcctgcttcttaatagttttattttcacta--atttgcaggtgtttggaggaaggagcagaggattttttgt |
44214531 |
T |
|
| Q |
459 |
tgaagccagtcaagttgtcaggtgtcaagtgcttgaaagagttcatcatgagaggtgaagtgaaagttggtgaggaaagttttttgaaaagaatgcgatc |
558 |
Q |
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| ||||||||||| ||||||| ||| | || ||||||| ||||||||||||||||||||||| | ||| ||| || ||| | | |||||||||||||| |
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| T |
44214532 |
taaagccagtcaaattgtcagatgtaagacgcctgaaagatttcatcatgagaggtgaagtgaaggatggcgagaaatgttctctcaaaagaatgcgatc |
44214631 |
T |
|
| Q |
559 |
atcagat |
565 |
Q |
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||||||| |
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| T |
44214632 |
atcagat |
44214638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 492 - 539
Target Start/End: Complemental strand, 40894326 - 40894279
Alignment:
| Q |
492 |
tgaaagagttcatcatgagaggtgaagtgaaagttggtgaggaaagtt |
539 |
Q |
| |
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||||||| |||||||||||||||||||| |||| ||||||| |||||| |
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| T |
40894326 |
tgaaagatttcatcatgagaggtgaagtaaaagatggtgagaaaagtt |
40894279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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