View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11694_high_8 (Length: 416)
Name: NF11694_high_8
Description: NF11694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11694_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 8 - 400
Target Start/End: Complemental strand, 36643566 - 36643176
Alignment:
| Q |
8 |
caatgtgattattaataagatgcaagttctgaaaaatggattccaaaggttcattagacagatcaatccgcaatgtatacctttcacactatgagtcagt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
36643566 |
caatgtgattattaataagatgcaagttctgaaaaatggattccaaaggttcattagacagatcaatccgcaatgtatagctttcacactatgagtcagt |
36643467 |
T |
|
| Q |
108 |
tgctatcgttatctataattagtttgtaaacttagtttacaaatagttgccgatgtcagttttctgttaattgagaggttggctaataaattttgttgct |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
36643466 |
tgctatcgttatctataattagtttgtaaacttagtttacagatagttgccgatgtcagttttctgttaattgag--gttggctaataaattttgttgct |
36643369 |
T |
|
| Q |
208 |
attagctgatgggcgtatctatataagccttcattactcttaattatcacaatttgttttttccttctccctcgatttgtcctcagtctgtattccaata |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
36643368 |
attagctgatgggcgtatctatataagccttcattactcttaattatcacaatttgttttttccttctccctcgatttgtcctcagtctgcattccaata |
36643269 |
T |
|
| Q |
308 |
caacatctctatagcttctatttgcacactatatgatcttttcaatttcaatcttgtaaacctttgttcattatgagcaatgggggatcaaac |
400 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36643268 |
caacatctctatagcttctattcgcacactatatgatcttttcaatttcaatcttgtaaacctttgttcattatgagcaatgggggatcaaac |
36643176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University