View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11694_low_10 (Length: 389)
Name: NF11694_low_10
Description: NF11694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11694_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 5 - 378
Target Start/End: Complemental strand, 3093409 - 3093036
Alignment:
| Q |
5 |
cactagtttgtaagaattgatttaaatcgaacacaaattttaaaatgtacctcgggagaaaacattccgaagtctctttgagaaccggtgaatgttgcgc |
104 |
Q |
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| T |
3093409 |
cactagtttgtaagaattgatttagatcgaacacaaattttaaaatgtacctcgggagaaaacattccgaagtctctttgagaaccggtgaatgttgcgc |
3093310 |
T |
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| Q |
105 |
cgctagcggcttcaatatagctgccaaagctggtaatgccaacaacagaaatgagggaaacctctaccggagaaggagatgggacataaacagagttcat |
204 |
Q |
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| T |
3093309 |
cgctagcggcttcaatatagctgccaaagctggtaatgccaacaacagaaatgagggaaacctctaccggagaaggagatgggacataaacagagttcat |
3093210 |
T |
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| Q |
205 |
tgggttatctgacattccttgtcctacaaatggttgatgtaacactacactgatgttatgttgcttaaggtgatgtgctgctccaattccactcaacatc |
304 |
Q |
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| T |
3093209 |
tgggttatctgacattccttgtcctacaaatggttgatgtaacactacactgatgttatgttgcttaaggtgatgtgctgctccaattccactcaacatc |
3093110 |
T |
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| Q |
305 |
agaagttgtgggctacctagtgcaccagctgatactatgatctcattcttagtcccatgattcaagtatgccct |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3093109 |
agaagttgtgggctacctagtgcaccagctgatactatgatctcattcttagtcccatgattcaagtatgccct |
3093036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 5 - 378
Target Start/End: Complemental strand, 3084529 - 3084156
Alignment:
| Q |
5 |
cactagtttgtaagaattgatttaaatcgaacacaaattttaaaatgtacctcgggagaaaacattccgaagtctctttgagaaccggtgaatgttgcgc |
104 |
Q |
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|||||||||||||||||||||||| || ||||||||||| | |||||||||| ||||| ||||||| ||| || ||| | || |||||| | ||| | |
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| T |
3084529 |
cactagtttgtaagaattgatttagatggaacacaaattgttaaatgtaccttgggagtaaacattgtgaactcgcttccattactggtgaaggctgcac |
3084430 |
T |
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| Q |
105 |
cgctagcggcttcaatatagctgccaaagctggtaatgccaacaacagaaatgagggaaacctctaccggagaaggagatgggacataaacagagttcat |
204 |
Q |
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|||| |||||||||| |||||||| ||| |||||||||||||||| ||||||||||| |||||||| || |||||||| ||||||||||||| |||||| |
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| T |
3084429 |
cgctcacggcttcaatgtagctgccgaagttggtaatgccaacaactgaaatgagggagacctctacgggggaaggagacgggacataaacagcgttcat |
3084330 |
T |
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| Q |
205 |
tgggttatctgacattccttgtcctacaaatggttgatgtaacactacactgatgttatgttgcttaaggtgatgtgctgctccaattccactcaacatc |
304 |
Q |
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||| ||||||||||||||||||||||| || ||||||| |||||||||||||||||| |||| | ||||||||||| ||||||||||||||||||||||| |
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| T |
3084329 |
tggattatctgacattccttgtcctaccaaaggttgatctaacactacactgatgttgtgttccctaaggtgatgtcctgctccaattccactcaacatc |
3084230 |
T |
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| Q |
305 |
agaagttgtgggctacctagtgcaccagctgatactatgatctcattcttagtcccatgattcaagtatgccct |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3084229 |
agaagttgtgggctacctagtgcaccagctgatactatgatctcattcttagtcccatgattcaagtatgccct |
3084156 |
T |
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