View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11694_low_11 (Length: 388)
Name: NF11694_low_11
Description: NF11694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11694_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 366
Target Start/End: Original strand, 30017153 - 30017498
Alignment:
| Q |
18 |
aattgatacagcagcacctttgaaatctgtcaaagatgctgtgtccaagtttggaggaatagtggattggaaaacccgtagaacccaaagtctggaggta |
117 |
Q |
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| T |
30017153 |
aattgatacagcagcacctttgaaatctgtcaaagatgctgtgtccaagtttggaggaatagtggattggaaaacccgtagaacccaaagtctggaggta |
30017252 |
T |
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| Q |
118 |
tgtcatactcgaattatattcttgctttagacatttttcttcttagttttataaaatcttataatggaccagtgttgttaaatagcagttatagcatggc |
217 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
30017253 |
tgtcat---cgaattatattcttgctttagacatttttcttcttagttttataaaatcttataatggactagtgttgttaaatagcggttatagcatggc |
30017349 |
T |
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| Q |
218 |
tgaatttgaacaaatcgctattgtgtaaaaacatattgtgctcatgcaaagtggatgaatgatattttctctatacattacttgttagtagtttctcatt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30017350 |
tgaatttgaacaaatcgctattgtgtaaaaacatattgtgctcatgcaaagtggatgaatgatattttctctatacattactttttagtagtttctcatt |
30017449 |
T |
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| Q |
318 |
ctttgaggcatgcacaatttgaagtctgaattccctaaaccagatgatt |
366 |
Q |
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| T |
30017450 |
ctttgaggcatgcacaatttgaagtctgaattccctaaaccagatgatt |
30017498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 17734030 - 17734084
Alignment:
| Q |
185 |
accagtgttgttaaatagcagttatagcatggctgaatttgaacaaatcgctatt |
239 |
Q |
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| T |
17734030 |
accagtgttgtcaaatagcggctatagcatagcagaatttgcacaaatcgctatt |
17734084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 17933250 - 17933193
Alignment:
| Q |
185 |
accagtgttgttaaatagcagttatagcatggctgaatttgaacaaatcgctattgtg |
242 |
Q |
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| T |
17933250 |
accagtgttgtcatatagcggctatagcatagcggaatttgaacaaatcgttattgtg |
17933193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 43391608 - 43391574
Alignment:
| Q |
207 |
tatagcatggctgaatttgaacaaatcgctattgt |
241 |
Q |
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| T |
43391608 |
tatagcatggcagaatttgaacaaatcgctattgt |
43391574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 241
Target Start/End: Complemental strand, 5627651 - 5627595
Alignment:
| Q |
187 |
cagtgttgttaaatagcagt--tatagcatggctgaatttgaacaaatcgctattgt |
241 |
Q |
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| T |
5627651 |
cagtgttgttaaatagcagtgttatagcatagcaaaatttgaacagatcgctattgt |
5627595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 25314123 - 25314070
Alignment:
| Q |
188 |
agtgttgttaaatagcagttatagcatggctgaatttgaacaaatcgctattgt |
241 |
Q |
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| T |
25314123 |
agtgttgtcaaatagcggttatagcatagaggaatttgaacaaatcgttattgt |
25314070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 46803481 - 46803529
Alignment:
| Q |
41 |
aatctgtcaaagatgctgtgtccaagtttggaggaatagtggattggaa |
89 |
Q |
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| T |
46803481 |
aatctgtcaaggaagctgtttctaagtttggaggaattgtggattggaa |
46803529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 29621803 - 29621847
Alignment:
| Q |
197 |
aaatagcagttatagcatggctgaatttgaacaaatcgctattgt |
241 |
Q |
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| T |
29621803 |
aaatagcagttatagcatagcaaaatttgaacaaatcactattgt |
29621847 |
T |
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