View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11694_low_13 (Length: 366)
Name: NF11694_low_13
Description: NF11694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11694_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 11 - 350
Target Start/End: Complemental strand, 23118557 - 23118218
Alignment:
| Q |
11 |
tgagatgaacacgagcaagactcgggatgacatccgtaagctgtgtgaaaatcaaattgccatcatgaaccatctggcctacaatactcttgaattacaa |
110 |
Q |
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| T |
23118557 |
tgagaagaacacgagcaagactcgggatgacatccgtaagctgtgtgaaaatcaaattgccatcatgaaccatctggcctacaatactcttgaattacaa |
23118458 |
T |
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| Q |
111 |
attcagaggaactggcaagcaagcgcgcttaacatccttctcaacatgcctcctctggccgcaaatcctctccagccttcggtttttaacatgaatccgc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23118457 |
attcagaggaactggcaagcaagcgcgcttaacatccttctcaacatgcctcctctggccgcaaatcctctccagccttcggtttttaacatgaatccgc |
23118358 |
T |
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| Q |
211 |
ctgatgtctcatcttcttctgatgcttcctctccaactgcaccctctatgtaggctccctctcctttttgcgatgacaaagagggagaagagaaaaagaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23118357 |
ctgatgtctcatcttcttctgatgcttcctctccaactgcaccctctatgtaggctccctctcctttttgcgatgacaaagagggagaagagaaaaagaa |
23118258 |
T |
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| Q |
311 |
aatctgcttgctgcagctattttattttgcttctgctttt |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
23118257 |
aatctgcttgctgcagctattttattttgcttctgctttt |
23118218 |
T |
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