View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11694_low_14 (Length: 342)
Name: NF11694_low_14
Description: NF11694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11694_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 11 - 181
Target Start/End: Original strand, 39943022 - 39943192
Alignment:
| Q |
11 |
caaaggaagtaagtgacccgcctttatttaattaatgatagaattaaaaaaggaattaacaaaggatgcatttggattataaactatacagtataaaagc |
110 |
Q |
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| T |
39943022 |
caaaggaagtaagtgacccgcctttattttattaatgatagaattaaaaaaggaattaacaaaggatgcatttggattataaactatacagtataaaagc |
39943121 |
T |
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| Q |
111 |
aactgaaacctctatgttctcaattatggtgataggatgatgagttagcaactttttagaaaatattgctg |
181 |
Q |
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| T |
39943122 |
aaccgaaacctctatgttctcaattatggtgataggatgatgagttagcaactttttagaaaatattgctg |
39943192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 247 - 326
Target Start/End: Original strand, 39943258 - 39943337
Alignment:
| Q |
247 |
gtacataacaggttctactttgatttttctgctacctatgtgggggttgggatgatatgtccatatataatcaatatttc |
326 |
Q |
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| T |
39943258 |
gtacataacaggttctactttgatttttctgctacctatgtgggggttgggatgatatgtccatatataatcaatatttc |
39943337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 247 - 326
Target Start/End: Complemental strand, 28739690 - 28739611
Alignment:
| Q |
247 |
gtacataacaggttctactttgatttttctgctacctatgtgggggttgggatgatatgtccatatataatcaatatttc |
326 |
Q |
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| T |
28739690 |
gtacataacaggttctactttgatttttctgctacctatgtgggggttgggatgatatgtccatatataatcaatatttc |
28739611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 247 - 326
Target Start/End: Complemental strand, 28749632 - 28749553
Alignment:
| Q |
247 |
gtacataacaggttctactttgatttttctgctacctatgtgggggttgggatgatatgtccatatataatcaatatttc |
326 |
Q |
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| T |
28749632 |
gtacataacaggttctactttgatttttctgctacctatgtgggggttgggatgatatgtccatatataatcaatatttc |
28749553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 247 - 326
Target Start/End: Complemental strand, 28753645 - 28753566
Alignment:
| Q |
247 |
gtacataacaggttctactttgatttttctgctacctatgtgggggttgggatgatatgtccatatataatcaatatttc |
326 |
Q |
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| T |
28753645 |
gtacataacaggttttactttgatttttctgctacctatgtgggggttgggatgatatgtccatatataatcaatatttc |
28753566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 82 - 180
Target Start/End: Complemental strand, 28739860 - 28739754
Alignment:
| Q |
82 |
ttggattataaactatacagtataaaagc-------aactgaaacctctatgttctcaattatggtgataggatgatgagttagcaac-tttttagaaaa |
173 |
Q |
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||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||| || |
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| T |
28739860 |
ttggattataaactatacaatataaaagttgaccaaaactgaaacctctatgttctcaattatggtgatagcatgatgagttgccaacttttttagataa |
28739761 |
T |
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| Q |
174 |
tattgct |
180 |
Q |
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||||||| |
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| T |
28739760 |
tattgct |
28739754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 82 - 180
Target Start/End: Complemental strand, 28749802 - 28749696
Alignment:
| Q |
82 |
ttggattataaactatacagtataaaagc-------aactgaaacctctatgttctcaattatggtgataggatgatgagttagcaac-tttttagaaaa |
173 |
Q |
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||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||| || |
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| T |
28749802 |
ttggattataaactatacaatataaaagttgaccaaaactgaaacctctatgttctcaattatggtgatagcatgatgagttgccaacttttttagataa |
28749703 |
T |
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| Q |
174 |
tattgct |
180 |
Q |
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||||||| |
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| T |
28749702 |
tattgct |
28749696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 180
Target Start/End: Complemental strand, 28753815 - 28753709
Alignment:
| Q |
82 |
ttggattataaactatacagtataaaagc-------aactgaaacctctatgttctcaattatggtgataggatgatgagttagcaac-tttttagaaaa |
173 |
Q |
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||||||||||||||| ||| ||||||||| |||||||||||||||||||| |||||||||||||| |||||||||| |||| |||||||| || |
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| T |
28753815 |
ttggattataaactacacaatataaaagctgaccgaaactgaaacctctatgttcttaattatggtgatagcatgatgagttgccaacttttttagataa |
28753716 |
T |
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| Q |
174 |
tattgct |
180 |
Q |
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||||||| |
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| T |
28753715 |
tattgct |
28753709 |
T |
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