View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11694_low_17 (Length: 324)

Name: NF11694_low_17
Description: NF11694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11694_low_17
NF11694_low_17
[»] chr8 (1 HSPs)
chr8 (18-309)||(38762439-38762730)


Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 38762439 - 38762730
Alignment:
Q  18 catgtatgtgttggttatgtataaagtctgtaaaacctagttcaactgccgaagttgttggttgaacatctttacttgagtttgaacttgaacctcacag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||  |||    
T  38762439 catgtatgtgttggttatgtataaagtctgtaaaacctagttcaattgccgaagttgttggttgaacatctttactcgagtttgaacttgaaccttgcag 38762538  T
Q  118 ttatatgtgagagtcggtgtttaccacttcttttacacaccaaaacaaaaactatataatatataatgaaatttgttgatctatgatcaggatcacatcg 217  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38762539 ttatatgtgagagtctgtgtttaccacttcttttacacaccaaaacaaaaactatataatatataatgaaatttgttgatctatgatcaggatcacatcg 38762638  T
Q  218 agtttggacatatatggtattgctctaataaacacttctgcaactttggccgctgccactactaactgtctcccagtgattaccttcttctt 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38762639 agtttggacatatatggtattgctctaataaacacttctgcaactttggccgctgccactactaactgtctcccagtgattaccttcttctt 38762730  T

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