View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11694_low_20 (Length: 310)
Name: NF11694_low_20
Description: NF11694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11694_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 5e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 53 - 290
Target Start/End: Original strand, 12945185 - 12945421
Alignment:
| Q |
53 |
tgagctttttaaaacttcaggtatgaaaatgttaaaaaataataacagtcttgtaagaaaatgttatagggtcttggaaatattaccgtgagttgtaccc |
152 |
Q |
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| T |
12945185 |
tgagttttttaaaacttcaagtatgaaaattttaaaaaataacaatagtcttgatagaaaatgttatagggt-ttggcaaaattaccgtgagttgtactc |
12945283 |
T |
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| Q |
153 |
agagttttgatatcattgtctcgacaaatttgtttagaggtaacaactctctctcttgctttgtacgtgctaaatagttatcaaggaaatcatttgagcc |
252 |
Q |
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| T |
12945284 |
tgagttttgatatcattgtctcgacaaatttgtctggaggtaacaactctctctcttgctttgtacgtgctaaatagttatcaaggaaatcatttgagcc |
12945383 |
T |
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| Q |
253 |
aagtgctactgtgaagagagcattcttaagcaactcga |
290 |
Q |
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| T |
12945384 |
aagtgctactgtgaagagagcattcttaagcaactcga |
12945421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 285
Target Start/End: Original strand, 12940135 - 12940201
Alignment:
| Q |
219 |
gtgctaaatagttatcaaggaaatcatttgagccaagtgctactgtgaagagagcattcttaagcaa |
285 |
Q |
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| T |
12940135 |
gtgccaaatagttatcaagaaaatcgtttgagccaaatgctactgtaaagagagaattcttaagcaa |
12940201 |
T |
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