View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11694_low_21 (Length: 291)
Name: NF11694_low_21
Description: NF11694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11694_low_21 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 39463480 - 39463761
Alignment:
| Q |
1 |
cttattcctctctcaatcttatccgcagttaaaagatagttagggtcgccaagaaactccactctgtaatccaatgaaatctccacagccatcttcaagt |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| || | |
|
|
| T |
39463480 |
cttattcctctctcaatcttatcagcagttacaagatagttaggctcgccaagaaactccactctgtaatccaatgaaatctccaccgccatctttaact |
39463579 |
T |
|
| Q |
101 |
cacacaccaattgaaaagcatttgtctgttgttcagcaaagagcagccacgtggcaatgggcacaccaaaatatatgctctcaagtgtggaattccagcc |
200 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||| | |||| ||||||| || |||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
39463580 |
cacacaccagttcaaaagcatttgtctgttgttcagcaaagatcggccaagtggcaagtggaacaccaaaatatatgctctccagtgtcgaattccagcc |
39463679 |
T |
|
| Q |
201 |
gcaatgagaaacaaatcctctcgtggctgggtgagctagtatctgtgtctgtggagcccatccaataacccttccaatctct |
282 |
Q |
| |
|
||||| || |||||||||| |||||| ||||| |||||||| || | |||||||||||| ||||| ||||||||||||||| |
|
|
| T |
39463680 |
acaatgtgagacaaatcctcccgtggccgggtgggctagtatttgggcctgtggagcccaaccaatcacccttccaatctct |
39463761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 2 - 285
Target Start/End: Original strand, 39457219 - 39457502
Alignment:
| Q |
2 |
ttattcctctctcaatcttatccgcagttaaaagatagttagggtcgccaagaaactccactctgtaatccaatgaaatctccacagccatcttcaagtc |
101 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||| |||||| |||||| | || ||||| |||| |||||||||||||||||||| || |
|
|
| T |
39457219 |
ttattcctctctcaatcttgtcggcagttaaaagatagttagactcgccattaaactctaacctataatctaatgcaatctccacagccatcttcagctc |
39457318 |
T |
|
| Q |
102 |
acacaccaattgaaaagcatttgtctgttgttcagcaaagagcagccacgtggcaatgggcacaccaaaatatatgctctcaagtgtggaattccagccg |
201 |
Q |
| |
|
||| ||||||||||| ||||||||||| || |||||||||||| |||||||||||| |||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
39457319 |
acataccaattgaaatgcatttgtctgctgatcagcaaagagcggccacgtggcaacaggcacaccaaaatatatgttctcgagtgtggaattccagcca |
39457418 |
T |
|
| Q |
202 |
caatgagaaacaaatcctctcgtggctgggtgagctagtatctgtgtctgtggagcccatccaataacccttccaatctctgct |
285 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||||||| || |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
39457419 |
caatgagaaacaaatcctcccgtggctgggtgggctagtatgtgcgtctgtggggcccatccaataacccttccaatctctgct |
39457502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 39461503 - 39461219
Alignment:
| Q |
1 |
cttattcctctctcaatcttatccgcagttaaaagatagttagggtcgccaagaaactccactctgtaatccaatgaaatctccacagccatcttcaagt |
100 |
Q |
| |
|
|||||||||||||||||||| || ||||||| |||||||||||| || ||| ||||||||||| ||||| || |||||||||||||||||||| | |
|
|
| T |
39461503 |
cttattcctctctcaatcttgtcagcagttacaagatagttaggctcaccattgaactccactctataatctaacacaatctccacagccatcttcagct |
39461404 |
T |
|
| Q |
101 |
cacacaccaattgaaaagcatttgtctgttgttcagcaaagagcagccacgtggcaatgggcacaccaaaatatatgctctcaagtgtggaattccagcc |
200 |
Q |
| |
|
|| |||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||| | ||||||||||| |
|
|
| T |
39461403 |
catgcaccaactgaaaagcattagtctgttgttcagcaaagagcggccacgtggcaatgggcacaccaaaatacatgctctcgagtattgaattccagcc |
39461304 |
T |
|
| Q |
201 |
gcaatgagaaacaaatcctctcgtggctgggtgagctagtatctgtgtctgtggagcccatccaataacccttccaatctctgct |
285 |
Q |
| |
|
||||| ||||| ||||||| |||||||||||| || | ||| || ||||| |||||||||||||| |||||||||||| ||||| |
|
|
| T |
39461303 |
acaatgggaaacgaatcctcccgtggctgggtgggccaatatttgagtctgcggagcccatccaatgacccttccaatccctgct |
39461219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 39455878 - 39455595
Alignment:
| Q |
1 |
cttattcctctctcaatcttatccgcagttaaaagatagttagggtcgccaagaaactccactctgtaatccaatgaaatctccacagccatcttcaagt |
100 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||| | | | | ||||||| || ||||| | | |||||||||||| ||||||| | |
|
|
| T |
39455878 |
cttattcctctctcaatcttgtccgaagttaaaagatagttaggcccactactatactccaccctataatctagcgcaatctccacagcaatcttcagct |
39455779 |
T |
|
| Q |
101 |
cacacaccaattgaaaagcatttgtctgttgttcagcaaagagcagccacgtggcaatgggcacaccaaaatatatgctctcaagtgtggaattccagcc |
200 |
Q |
| |
|
|||||||||||| ||||||| | ||||||||||||||||||| |||| || ||||||||||||||||| ||||||| ||| |||||||||||||| || |
|
|
| T |
39455778 |
cacacaccaattcaaaagcagtaacctgttgttcagcaaagagcggccatgttgcaatgggcacaccaaagtatatgccctcgagtgtggaattccaacc |
39455679 |
T |
|
| Q |
201 |
gcaatgagaaacaaatcctctcgtggctgggtgagctagtatctgtgtctgtggagcccatccaataacccttccaatctctgc |
284 |
Q |
| |
|
||||| ||||||||||||| |||||||| || |||||||| || || ||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
39455678 |
acaatgtgaaacaaatcctcctgtggctggatgggctagtatttgggtttgtggagcccaaccaatcacccttccaatctctgc |
39455595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 39487715 - 39487437
Alignment:
| Q |
1 |
cttattcctctctcaatcttatccgcagttaaaagatagttagggtcgccaagaaactccactctgtaatccaatgaaatctccacagccatcttcaagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| | || |||| |||| | |||||||| | ||| |||||| | || |||| | |
|
|
| T |
39487715 |
cttattcctctctcaatcttatccgcagttacaagatagttaggcccttcattaaaccccaccttataatccaaagcaatttccacacctattttcagtt |
39487616 |
T |
|
| Q |
101 |
cacacaccaattgaaaagcatttgtctgttgttcagcaaagagcagccacgtggcaatgggcacaccaaaatatatgctctcaagtgtggaattccagcc |
200 |
Q |
| |
|
|||||||||||| ||||||||| | |||||| |||||| |||| |||||| |||||| ||||||||||||||||||||||| ||||| |||||||| || |
|
|
| T |
39487615 |
cacacaccaattcaaaagcattagcctgttgctcagcatagagtggccacgcggcaataggcacaccaaaatatatgctctcgagtgttgaattccaacc |
39487516 |
T |
|
| Q |
201 |
gcaatgagaaacaaatcctctcgtggctgggtgagctagtatctgtgtctgtggagcccatccaataacccttccaatc |
279 |
Q |
| |
|
||||| ||||||||||||| |||||||| ||||||||||| || | |||| | ||||||||||| |||||||||||| |
|
|
| T |
39487515 |
acaatgcgaaacaaatcctccagtggctggatgagctagtatttgggcctgttgggcccatccaattacccttccaatc |
39487437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 39452250 - 39451969
Alignment:
| Q |
1 |
cttattcctctctcaatcttatccgcagttaaaagatagttagggtcgccaagaaactccactctgtaatccaatgaaatctccacagccatcttcaagt |
100 |
Q |
| |
|
||||||||| |||||||||| || ||||| |||||||||||||| | | ||||||||| || ||||| || | ||||||||| | |||||||| | |
|
|
| T |
39452250 |
cttattcctttctcaatcttgtcagcagtcaaaagatagttaggaccactgttaaactccaccctataatctaacgcaatctccacggaaatcttcaact |
39452151 |
T |
|
| Q |
101 |
cacacaccaattgaaaagcatttgtctgttgttcagcaaagagcagccacgtggcaatgggcacaccaaaatatatgctctcaagtgtggaattccagcc |
200 |
Q |
| |
|
|||||||||||| ||||||||| |||||| |||||||||||| |||| || ||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39452150 |
cacacaccaattcaaaagcattaacctgttgctcagcaaagagcggccatgttgcaatgggcacaccaaaatatatgctctcgagtgtggaattccagcc |
39452051 |
T |
|
| Q |
201 |
gcaatgagaaacaaatcctctcgtggctgggtgagctagtatctgtgtctgtggagcccatccaataacccttccaatctct |
282 |
Q |
| |
|
||||| ||||||||||||| ||||||| || |||||||| || | ||||| ||||| ||||| ||||||||||||||| |
|
|
| T |
39452050 |
acaatgtgaaacaaatcctcctatggctggatgtgctagtatttgggcttgtggggcccaaccaatcacccttccaatctct |
39451969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 39476762 - 39476482
Alignment:
| Q |
1 |
cttattcctctctcaatcttatccgcagttaaaagatagttagggtcgccaagaaactccactctgtaatccaatgaaatctccacagccatcttcaagt |
100 |
Q |
| |
|
|||||||||| |||||| ||||| ||||||| |||||||||||| ||| |||||||| || |||||||||| || |||||| | ||||||| | |
|
|
| T |
39476762 |
cttattcctcgctcaattttatcggcagttacaagatagttaggcctaccacttaactccaccctataatccaatgcgatatccacacctatcttcagct |
39476663 |
T |
|
| Q |
101 |
cacacaccaattgaaaagcatttgtctgttgttcagcaaagagcagccacgtggcaatgggcacaccaaaatatatgctctcaagtgtggaattccagcc |
200 |
Q |
| |
|
|||||||||||| ||||||||| | |||||||||||||||||| |||| | |||||| || |||||||||||||||||||| ||||| |||||||| || |
|
|
| T |
39476662 |
cacacaccaattcaaaagcattagcctgttgttcagcaaagagtggccatgcggcaattggtacaccaaaatatatgctctcgagtgttgaattccaacc |
39476563 |
T |
|
| Q |
201 |
gcaatgagaaacaaatcctctcgtggctgggtgagctagtatctgtgtctgtggagcccatccaataacccttccaatctc |
281 |
Q |
| |
|
||||| ||||||||||||| |||||||||| |||||||| || | |||| | |||||||||| | |||||||||||| |
|
|
| T |
39476562 |
acaatgtgaaacaaatcctcctatggctgggtgggctagtatttgggcctgttgggcccatccaactatccttccaatctc |
39476482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 39473280 - 39472996
Alignment:
| Q |
1 |
cttattcctctctcaatcttatccgcagttaaaagatagttagggtcgccaagaaactccactctgtaatccaatgaaatctccacagccatcttcaagt |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||| | ||| ||||||| | || |||||||| ||||| || || | || ||||| | |
|
|
| T |
39473280 |
cttattcctctctcaatcttatcggcagttacaagatagttaggcgcaccattaaactccgccctataatccaacgaaatttcaactcctattttcaact |
39473181 |
T |
|
| Q |
101 |
cacacaccaattgaaaagcatttgtctgttgttcagcaaagagcagccacgtggcaatgggcacaccaaaatatatgctctcaagtgtggaattccagcc |
200 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||| ||| | || |||| | ||| || |||||||||||||| |||||||| ||| |||||||| || |
|
|
| T |
39473180 |
cacacaccaattcaaaagcattagtctgttgttctgcataaagtggccatgcggctataggcacaccaaaataaatgctctcgagtactgaattccaacc |
39473081 |
T |
|
| Q |
201 |
gcaatgagaaacaaatcctctcgtggctgggtgagctagtatctgtgtctgtggagcccatccaataacccttccaatctctgct |
285 |
Q |
| |
|
||||| ||| ||||||||| |||||||||| |||||||| || ||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
39473080 |
acaatgcgaagcaaatcctccaatggctgggtgggctagtatttggacttgtggggcccatccaacaacccttccaatctctgct |
39472996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 39484515 - 39484233
Alignment:
| Q |
1 |
cttattcctctctcaatcttatccgcagttaaaagatagttagggtcgccaagaaactccactctgtaatccaatgaaatctccacagcc--atcttcaa |
98 |
Q |
| |
|
|||||| ||||||||||||| || ||| ||| ||||||||||| || ||| |||||||| || |||||||||| |||||||||| | |||| || |
|
|
| T |
39484515 |
cttattactctctcaatcttgtcggcacttacaagatagttagactcaccactaaactccatcctataatccaatgcaatctccacacacctatctgcag |
39484416 |
T |
|
| Q |
99 |
gtcacacaccaattgaaaagcatttgtctgttgttcagcaaagagcagccacgtggcaatgggcacaccaaaatatatgctctcaagtgtggaattccag |
198 |
Q |
| |
|
||||||||||||| ||||||||| | |||||||||| ||||||| |||| | |||||| ||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
39484415 |
ctcacacaccaattcaaaagcattagcctgttgttcaacaaagagtggccatgcggcaataggcacaccaaaatatatgctctcgagtgttgaattccaa |
39484316 |
T |
|
| Q |
199 |
ccgcaatgagaaacaaatcctctcgtggctgggtgagctagtatctgtgtctgtggagcccatccaataacccttccaatctc |
281 |
Q |
| |
|
|| |||| ||||||||||||| |||||||||| |||||||| || | ||| | ||||||| ||| | |||||||||||| |
|
|
| T |
39484315 |
ccataatgtgaaacaaatcctcctatggctgggtgggctagtatttgggcttgttgggcccatctaattatccttccaatctc |
39484233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 67 - 276
Target Start/End: Original strand, 43311519 - 43311728
Alignment:
| Q |
67 |
taatccaatgaaatctccacagccatcttcaagtcacacaccaattgaaaagcatttgtctgttgttcagcaaagagcagccacgtggcaatgggcacac |
166 |
Q |
| |
|
||||||| || |||||||||| ||||||||| ||| |||| | |||||||||||| || ||||| ||||||||||| |||| |||||||| ||||||| |
|
|
| T |
43311519 |
taatccactgcaatctccacacccatcttcagctcagacacaagttgaaaagcattggtttgttgatcagcaaagagtggccatgtggcaataggcacac |
43311618 |
T |
|
| Q |
167 |
caaaatatatgctctcaagtgtggaattccagccgcaatgagaaacaaatcctctcgtggctgggtgagctagtatctgtgtctgtggagcccatccaat |
266 |
Q |
| |
|
|| ||||||||||||| || || |||||||| || ||||| |||||||| |||| || ||||| ||||| |||| || ||| |||||||||||||| |
|
|
| T |
43311619 |
cataatatatgctctcgagagtcgaattccaaccacaatgtgaaacaaagcctcctgttgctggatgagcgagtacttggacctgaggagcccatccaat |
43311718 |
T |
|
| Q |
267 |
aacccttcca |
276 |
Q |
| |
|
||||||||| |
|
|
| T |
43311719 |
gacccttcca |
43311728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 106
Target Start/End: Original strand, 39452902 - 39453006
Alignment:
| Q |
2 |
ttattcctctctcaatcttatccgcagttaaaagatagttagggtcgccaagaaactccactctgtaatccaatgaaatctccacagccatcttcaagtc |
101 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||| |||||| || |||| |||||||| || ||||| || | ||||||||| |||||||||| || |
|
|
| T |
39452902 |
ttattcctctctcaattttgtccgcagttaaaagagagttagactcaccaataaactccaacctctaatctaacgtaatctccacgaccatcttcaactc |
39453001 |
T |
|
| Q |
102 |
acaca |
106 |
Q |
| |
|
||||| |
|
|
| T |
39453002 |
acaca |
39453006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 282
Target Start/End: Original strand, 39469924 - 39469964
Alignment:
| Q |
242 |
tctgtgtctgtggagcccatccaataacccttccaatctct |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39469924 |
tctgtgtctgtggagcccatccaataacccttccaatctct |
39469964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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