View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11694_low_24 (Length: 280)

Name: NF11694_low_24
Description: NF11694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11694_low_24
NF11694_low_24
[»] chr7 (8 HSPs)
chr7 (118-270)||(11396247-11396399)
chr7 (118-270)||(11404269-11404421)
chr7 (118-270)||(11380869-11381021)
chr7 (118-212)||(11453161-11453255)
chr7 (18-76)||(11381061-11381119)
chr7 (18-76)||(11396439-11396497)
chr7 (18-76)||(11404461-11404519)
chr7 (18-72)||(11453296-11453350)


Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 118 - 270
Target Start/End: Complemental strand, 11396399 - 11396247
Alignment:
Q  118 tggcttcaaaggtattcgttctcgcgctcatctttgttaccattgttggcgtggctatggccgctgaagccccaacttcatcaccaaaggcatcagcacc 217  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11396399 tggcttcaaaggtattcgttctcgcgctcatctttgttgccattgttggcgtggctatggccgctgaagccccaacttcatcaccaaaggcatcagcacc 11396300  T
Q  218 agtagcagaagcagaatcgccaaaaacctcagaggctcctaccaccttctctg 270  Q
    ||| |||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  11396299 agttgcagaagcagaatccccaaaaacctcagaggctcctaccaccttttctg 11396247  T

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Target: chr7; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 118 - 270
Target Start/End: Complemental strand, 11404421 - 11404269
Alignment:
Q  118 tggcttcaaaggtattcgttctcgcgctcatctttgttaccattgttggcgtggctatggccgctgaagccccaacttcatcaccaaaggcatcagcacc 217  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11404421 tggcttcaaaggtattcgttctcgcgctcatctttgttgccattgttggcgtggctatggccgctgaagccccaacttcatcaccaaaggcatcagcacc 11404322  T
Q  218 agtagcagaagcagaatcgccaaaaacctcagaggctcctaccaccttctctg 270  Q
    ||| |||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  11404321 agttgcagaagcagaatccccaaaaacctcagaggctcctaccaccttttctg 11404269  T

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Target: chr7; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 118 - 270
Target Start/End: Complemental strand, 11381021 - 11380869
Alignment:
Q  118 tggcttcaaaggtattcgttctcgcgctcatctttgttaccattgttggcgtggctatggccgctgaagccccaacttcatcaccaaaggcatcagcacc 217  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11381021 tggcttcaaaggtattcgttctcgcgctcatctttgttgtcattgttggcgtggctatggccgctgaagccccagcttcatcaccaaaggcatcagcacc 11380922  T
Q  218 agtagcagaagcagaatcgccaaaaacctcagaggctcctaccaccttctctg 270  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11380921 agttgcagaagcagaatcgccaaaaacctcagaggctcctaccaccttttctg 11380869  T

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Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 118 - 212
Target Start/End: Complemental strand, 11453255 - 11453161
Alignment:
Q  118 tggcttcaaaggtattcgttctcgcgctcatctttgttaccattgttggcgtggctatggccgctgaagccccaacttcatcaccaaaggcatca 212  Q
    ||||||| |||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||| |||||||||||||| |||||    
T  11453255 tggcttctaaggtattcgttctcgcgctcatctttgttgccgttgttggcgtcgctatggccgctgaagccccagcttcatcaccaaagtcatca 11453161  T

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Target: chr7; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 11381119 - 11381061
Alignment:
Q  18 attcaccacattcattcttgttagtattttctctaatattgttttattagagaaatact 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11381119 attcaccacattcattcttgttagtattttctctaatattgttttattagagaaatact 11381061  T

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Target: chr7; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 11396497 - 11396439
Alignment:
Q  18 attcaccacattcattcttgttagtattttctctaatattgttttattagagaaatact 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11396497 attcaccacattcattcttgttagtattttctctaatattgttttattagagaaatact 11396439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 11404519 - 11404461
Alignment:
Q  18 attcaccacattcattcttgttagtattttctctaatattgttttattagagaaatact 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11404519 attcaccacattcattcttgttagtattttctctaatattgttttattagagaaatact 11404461  T

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Target: chr7; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 11453350 - 11453296
Alignment:
Q  18 attcaccacattcattcttgttagtattttctctaatattgttttattagagaaa 72  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  11453350 attcaccacattcattcttgttagtattttctctaatattgtttcattagagaaa 11453296  T

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