View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11694_low_28 (Length: 260)

Name: NF11694_low_28
Description: NF11694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11694_low_28
NF11694_low_28
[»] chr8 (2 HSPs)
chr8 (11-244)||(27227989-27228222)
chr8 (11-193)||(27223798-27223980)
[»] chr1 (9 HSPs)
chr1 (16-244)||(11547058-11547286)
chr1 (37-244)||(48618280-48618487)
chr1 (53-166)||(48639761-48639874)
chr1 (82-157)||(48661442-48661517)
chr1 (37-244)||(48666992-48667199)
chr1 (82-166)||(48585217-48585301)
chr1 (54-161)||(48628731-48628838)
chr1 (55-190)||(48652986-48653121)
chr1 (55-167)||(48656434-48656546)
[»] chr3 (1 HSPs)
chr3 (82-233)||(19665647-19665798)


Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 244
Target Start/End: Original strand, 27227989 - 27228222
Alignment:
Q  11 cacagatattacttgcagtttttgtttttgggttttgaaataaaggaccaatgggtcttattaagacagaattttttgaaatataatttatgaaatcatg 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27227989 cacagatattacttgcagtttttgtttttgggttttgaaataaaggaccaatgggtcttattaagacagaatattttgaaatataatttatgaaatcatg 27228088  T
Q  111 ttccaattcctcataggtatccaccaatacacaaaacactttagacaagttcttaatctgttccaataagagtgacccaagaaatggatacttactaaaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27228089 ttccaattcctcataggtatccaccaatacacaaaacactttagacaagttcttaatctgttccaataagagtgacccaagaaatggatacttactaaaa 27228188  T
Q  211 caatgaaggaaatctggtatttcattgtatttaa 244  Q
    ||||||||||||||||||||||||||||||||||    
T  27228189 caatgaaggaaatctggtatttcattgtatttaa 27228222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 11 - 193
Target Start/End: Original strand, 27223798 - 27223980
Alignment:
Q  11 cacagatattacttgcagtttttgtttttgggttttgaaataaaggaccaatgggtcttattaagacagaattttttgaaatataatttatgaaatcatg 110  Q
    ||||||||||||||||| ||||  ||| |||||||| ||| ||||||||||| |||||||||  ||| |||||||| |||| ||| |  |||||||||||    
T  27223798 cacagatattacttgcatttttaatttgtgggtttttaaacaaaggaccaataggtcttattttgactgaatttttagaaacatagtcgatgaaatcatg 27223897  T
Q  111 ttccaattcctcataggtatccaccaatacacaaaacactttagacaagttcttaatctgttccaataagagtgacccaagaa 193  Q
    ||| | ||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||| || || || ||||||||    
T  27223898 ttctagttcctcatacgtatcaaccaatacacaaaacactttagacaagttcttaatttgttccattatgattgtcccaagaa 27223980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 11547058 - 11547286
Alignment:
Q  16 atattacttgcagtttttgtttttgggttttgaaataaaggaccaatgggtcttattaagacagaattttttgaaatataatttatgaaatcatgttcca 115  Q
    ||||||||||||  |||  | ||||| |||| ||| || |||||||| ||||||||   ||  || ||||||| |||||| |  |||||||||||||| |    
T  11547058 atattacttgcacctttaatatttggatttttaaacaatggaccaataggtcttatgtggatggatttttttgtaatatagtcaatgaaatcatgttcta 11547157  T
Q  116 attcctcataggtatccaccaatacacaaaacactttagacaagttcttaatctgttccaataagagtgacccaagaaatggatacttactaaaacaatg 215  Q
     ||| |||||||| || || || ||||||||||||||||| || ||||||| |||||| || | ||||| ||| |||||||||||   |||||||  |||    
T  11547158 gttcttcataggtttctactaaaacacaaaacactttagataaattcttaaactgttctaagatgagtgtccctagaaatggatatggactaaaaggatg 11547257  T
Q  216 aaggaaatctggtatttcattgtatttaa 244  Q
    ||| |||||||| ||||||||||||||||    
T  11547258 aagaaaatctgggatttcattgtatttaa 11547286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 244
Target Start/End: Complemental strand, 48618487 - 48618280
Alignment:
Q  37 tttgggttttgaaataaaggaccaatgggtcttattaagacagaattttttgaaatataatttatgaaatcatgttccaattcctcataggtatccacca 136  Q
    ||||| || ||||| || ||||||||||||||||  || |  |  |||||||||||||| |  ||||||||||| || | ||| |||||||| || || |    
T  48618487 tttggattgtgaaacaatggaccaatgggtcttacgaaaattgttttttttgaaatatagtcaatgaaatcatgctctagttcttcataggtttctacta 48618388  T
Q  137 atacacaaaacactttagacaagttcttaatctgttccaataagagtgacccaagaaatggatacttactaaaacaatgaaggaaatctggtatttcatt 236  Q
    | |||||||| ||||||||||| ||||||| |||||| || | ||||| ||| ||||||||| | | |||||||  |||||| |||||||| ||||||||    
T  48618387 aaacacaaaatactttagacaaattcttaaactgttctaagatgagtgtccctagaaatggaaattgactaaaaggatgaagaaaatctgggatttcatt 48618288  T
Q  237 gtatttaa 244  Q
    ||||||||    
T  48618287 gtatttaa 48618280  T

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Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 166
Target Start/End: Original strand, 48639761 - 48639874
Alignment:
Q  53 aaggaccaatgggtcttattaagacagaattttttgaaatataatttatgaaatcatgttccaattcctcataggtatccaccaatacacaaaacacttt 152  Q
    |||||||||| ||||||||   ||  || |||||||||||||||| |||||||||||| || | ||| |||||||||||||| |||||||||||||||||    
T  48639761 aaggaccaataggtcttatggtgattgatttttttgaaatataatctatgaaatcatgctctagttcttcataggtatccactaatacacaaaacacttt 48639860  T
Q  153 agacaagttcttaa 166  Q
    |||||||| |||||    
T  48639861 agacaagtccttaa 48639874  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 48661442 - 48661517
Alignment:
Q  82 ttttttgaaatataatttatgaaatcatgttccaattcctcataggtatccaccaatacacaaaacactttagaca 157  Q
    ||||||||||||||||  ||||||||||| || ||||| ||| |||||||||| ||||||||||||||||||||||    
T  48661442 ttttttgaaatataatcgatgaaatcatgctctaattcttcaaaggtatccactaatacacaaaacactttagaca 48661517  T

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Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 244
Target Start/End: Original strand, 48666992 - 48667199
Alignment:
Q  37 tttgggttttgaaataaaggaccaatgggtcttattaagacagaattttttgaaatataatttatgaaatcatgttccaattcctcataggtatccacca 136  Q
    ||||| |||| ||| |||||||||| |||||||||   ||  || ||||  ||||||||||  ||||||||||| || ||||| ||| |||||||||| |    
T  48666992 tttggatttttaaacaaaggaccaacgggtcttatggcgattgatttttccgaaatataatcgatgaaatcatgctctaattcttcaaaggtatccacta 48667091  T
Q  137 atacacaaaacactttagacaagttcttaatctgttccaataagagtgacccaagaaatggatacttactaaaacaatgaaggaaatctggtatttcatt 236  Q
    ||||||||||||||||||||| || ||| |||||| ||     ||||| ||| |||| ||||||  ||| ||||  ||| |  |||||||| ||||||||    
T  48667092 atacacaaaacactttagacatgtcctttatctgtgccgtggtgagtgtccctagaattggatatctacaaaaaggatgtataaaatctgggatttcatt 48667191  T
Q  237 gtatttaa 244  Q
    ||||||||    
T  48667192 gtatttaa 48667199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 166
Target Start/End: Original strand, 48585217 - 48585301
Alignment:
Q  82 ttttttgaaatataatttatgaaatcatgttccaattcctcataggtatccaccaatacacaaaacactttagacaagttcttaa 166  Q
    ||||| |||||||||| |||||| ||||| || | ||| |||||||||||||| |||||||||||||||||||| |||| |||||    
T  48585217 tttttcgaaatataatctatgaattcatgctctagttcttcataggtatccactaatacacaaaacactttagataagtccttaa 48585301  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 161
Target Start/End: Original strand, 48628731 - 48628838
Alignment:
Q  54 aggaccaatgggtcttattaagacagaattttttgaaatataatttatgaaatcatgttccaattcctcataggtatccaccaatacacaaaacacttta 153  Q
    ||||||||||||||| || | ||| || ||||| |||| |||||  ||||||||||| || | ||| |||||||||||| | ||||||||||| | |||     
T  48628731 aggaccaatgggtctaatgaggactgattttttggaaagataatcgatgaaatcatgctctagttcttcataggtatccgctaatacacaaaatattttg 48628830  T
Q  154 gacaagtt 161  Q
    ||||||||    
T  48628831 gacaagtt 48628838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 190
Target Start/End: Original strand, 48652986 - 48653121
Alignment:
Q  55 ggaccaatgggtcttattaagacagaattttttgaaatataatttatgaaatcatgttccaattcctcataggtatccaccaatacacaaaacactttag 154  Q
    ||||||||||||||||| | ||  || || ||||||||||| |  ||||||||||| || | ||| |||||||| || || || |||||||| |||||||    
T  48652986 ggaccaatgggtcttatgaggattgatttgtttgaaatatagtcaatgaaatcatgctctagttcttcataggtttctactaaaacacaaaatactttag 48653085  T
Q  155 acaagttcttaatctgttccaataagagtgacccaa 190  Q
    | || |||||||| ||||| || | ||||| |||||    
T  48653086 ataaattcttaatttgttctaagacgagtgtcccaa 48653121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 167
Target Start/End: Original strand, 48656434 - 48656546
Alignment:
Q  55 ggaccaatgggtcttattaagacagaattttttgaaatataatttatgaaatcatgttccaattcctcataggtatccaccaatacacaaaacactttag 154  Q
    |||||||| |||||||| | ||  || ||||  ||||||||||  || |||||| | || | ||| |||||||||||||| |||||||| ||  ||||||    
T  48656434 ggaccaattggtcttatgatgattgacttttccgaaatataatcgataaaatcaggctctagttcttcataggtatccacaaatacacacaatgctttag 48656533  T
Q  155 acaagttcttaat 167  Q
    |||| ||||||||    
T  48656534 acaaattcttaat 48656546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 233
Target Start/End: Complemental strand, 19665798 - 19665647
Alignment:
Q  82 ttttttgaaatataatttatgaaatcatgttccaattcctcataggtatccaccaatacacaaaacactttagacaagttcttaatctgttccaataaga 181  Q
    ||||| |||||||| |  ||| ||||||| || | ||| |||||  |||||||||||||||||||||||||||| || ||||||| |||||| || | ||    
T  19665798 tttttcgaaatatagtcgatgtaatcatgctctagttcatcataactatccaccaatacacaaaacactttagataaattcttaaactgttctaaaatga 19665699  T
Q  182 gtgacccaagaaatggatacttactaaaacaatgaaggaaatctggtatttc 233  Q
    ||| ||| ||||||| ||| |||||||||  ||| || ||||| ||||||||    
T  19665698 gtgtccctagaaatgaatatttactaaaaggatgtagaaaatccggtatttc 19665647  T

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