View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11694_low_29 (Length: 254)
Name: NF11694_low_29
Description: NF11694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11694_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 237
Target Start/End: Complemental strand, 280601 - 280375
Alignment:
| Q |
11 |
cacagacaagctagaaagaacttatggataaaatacaatacaagagcaagagggagaatatgatatatctatccatcccttaattatatctaaaataaac |
110 |
Q |
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| T |
280601 |
cacagacaagctagaaagaacttatggataaaatataatacaagagcaagagggagaatatgatatatctatccatcccttaattatatctaaaataaac |
280502 |
T |
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| Q |
111 |
atctttataataataaactatagtagtattgaattgtgatattgaatatgtttcaatcagatgcattttgatgataagaattcagaaaacaaaaaccata |
210 |
Q |
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| T |
280501 |
atctttataataataaactatagcagtattgaattgtgatattgaatatgtttcaatcagatgcattttgatgataagaattcagaaaacaaaaaccata |
280402 |
T |
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| Q |
211 |
cgtacctgtttatttgtctctgtgttg |
237 |
Q |
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||||||||||||||||||||||||||| |
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| T |
280401 |
cgtacctgtttatttgtctctgtgttg |
280375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 237
Target Start/End: Original strand, 635251 - 635477
Alignment:
| Q |
11 |
cacagacaagctagaaagaacttatggataaaatacaatacaagagcaagagggagaatatgatatatctatccatcccttaattatatctaaaataaac |
110 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
635251 |
cacagacaagctagaaagaacttatggataaaatataatacaagagcaagagggagaatatgatatatctatccatcccttaattatatctaaaataaac |
635350 |
T |
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| Q |
111 |
atctttataataataaactatagtagtattgaattgtgatattgaatatgtttcaatcagatgcattttgatgataagaattcagaaaacaaaaaccata |
210 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
635351 |
atctttataataataaactatagcagtattgaattgtgatattgaatatgtttcaatcagatgcattttgatgataagaattcagaaaacaaaaaccata |
635450 |
T |
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| Q |
211 |
cgtacctgtttatttgtctctgtgttg |
237 |
Q |
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||||||||||||||||||||||||||| |
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| T |
635451 |
cgtacctgtttatttgtctctgtgttg |
635477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 237
Target Start/End: Original strand, 821054 - 821280
Alignment:
| Q |
11 |
cacagacaagctagaaagaacttatggataaaatacaatacaagagcaagagggagaatatgatatatctatccatcccttaattatatctaaaataaac |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
821054 |
cacagacaagctagaaagaacttatggataaaatataatacaagagcaagagggagaatatgatatatctatccatcccttaattatatctaaaataaac |
821153 |
T |
|
| Q |
111 |
atctttataataataaactatagtagtattgaattgtgatattgaatatgtttcaatcagatgcattttgatgataagaattcagaaaacaaaaaccata |
210 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
821154 |
atctttataataataaactatagcagtattgaattgtgatattgaatatgtttcaatcagatgcattttgatgataagaattcagaaaacaaaaaccata |
821253 |
T |
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| Q |
211 |
cgtacctgtttatttgtctctgtgttg |
237 |
Q |
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||||||||||||||||||||||||||| |
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| T |
821254 |
cgtacctgtttatttgtctctgtgttg |
821280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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