View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11694_low_30 (Length: 249)

Name: NF11694_low_30
Description: NF11694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11694_low_30
NF11694_low_30
[»] chr5 (6 HSPs)
chr5 (3-236)||(7328503-7328736)
chr5 (9-53)||(10859885-10859929)
chr5 (136-215)||(14671139-14671218)
chr5 (10-49)||(7667605-7667644)
chr5 (164-215)||(10373025-10373076)
chr5 (9-68)||(10860387-10860445)
[»] chr6 (6 HSPs)
chr6 (137-217)||(9505886-9505966)
chr6 (136-216)||(19260773-19260853)
chr6 (10-57)||(6214808-6214855)
chr6 (175-219)||(13687753-13687797)
chr6 (136-218)||(3525040-3525123)
chr6 (158-218)||(10054952-10055012)
[»] chr7 (2 HSPs)
chr7 (137-215)||(40491694-40491772)
chr7 (9-55)||(45369157-45369203)
[»] scaffold0036 (2 HSPs)
scaffold0036 (157-212)||(845-900)
scaffold0036 (12-57)||(990-1035)
[»] chr1 (6 HSPs)
chr1 (163-213)||(6744974-6745024)
chr1 (164-218)||(43541582-43541636)
chr1 (10-52)||(48490552-48490594)
chr1 (168-212)||(6932092-6932136)
chr1 (136-215)||(18325282-18325359)
chr1 (14-54)||(24697643-24697683)
[»] chr2 (6 HSPs)
chr2 (154-203)||(6925831-6925880)
chr2 (164-217)||(38129402-38129455)
chr2 (13-57)||(6767673-6767717)
chr2 (171-219)||(29968908-29968956)
chr2 (168-215)||(3476334-3476381)
chr2 (10-39)||(33502909-33502938)
[»] chr3 (5 HSPs)
chr3 (11-55)||(49634084-49634128)
chr3 (136-218)||(24916599-24916681)
chr3 (136-218)||(25129427-25129509)
chr3 (12-68)||(30243933-30243989)
chr3 (171-215)||(31012860-31012904)
[»] chr4 (9 HSPs)
chr4 (10-49)||(18597035-18597074)
chr4 (157-212)||(23104704-23104759)
chr4 (4-39)||(46012671-46012706)
chr4 (171-213)||(22684000-22684042)
chr4 (137-190)||(38740290-38740343)
chr4 (12-57)||(51093256-51093300)
chr4 (171-215)||(17897799-17897843)
chr4 (186-218)||(18597176-18597208)
chr4 (12-68)||(29468664-29468719)
[»] chr8 (3 HSPs)
chr8 (164-214)||(35775536-35775586)
chr8 (12-48)||(8017169-8017205)
chr8 (157-213)||(14093024-14093080)
[»] scaffold0695 (1 HSPs)
scaffold0695 (157-213)||(3370-3426)


Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 3 - 236
Target Start/End: Complemental strand, 7328736 - 7328503
Alignment:
Q  3 ttcaaatagaattgattctaacttgaagctagaatttgaaacttttgcctctacacgttgatttttggtctttaagttattattcgacctacttttacat 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7328736 ttcaaatagaattgattctaacttgaagctagaatttgaaacttttgcctctacacattgatttttggtctttaagttattattcgacctacttttacat 7328637  T
Q  103 gattgtatctaaacttaagccacattacattcaattcaactcaattttatgcataatcaactttacagaatcaattcatttaaaatcagtttttgtcact 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7328636 gattgtatctaaacttaagccacattacattcaattcaactcaattttatgcataatcaactttacagaatcaattcatttaaaatcagtttttgtcact 7328537  T
Q  203 gcagaaccaaacacactaaccattttggtgcttc 236  Q
    ||||||||||||||||||||||||||||||||||    
T  7328536 gcagaaccaaacacactaaccattttggtgcttc 7328503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 10859929 - 10859885
Alignment:
Q  9 tagaattgattctaacttgaagctagaatttgaaacttttgcctc 53  Q
    |||||||||||||||||||||||||||||||| | ||||||||||    
T  10859929 tagaattgattctaacttgaagctagaatttggagcttttgcctc 10859885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 14671139 - 14671218
Alignment:
Q  136 attcaactcaattttatgcataatcaactttacagaatcaattcatttaaaatcagtttttgtcactgcagaaccaaaca 215  Q
    |||||| ||| |||||  ||||||||| || ||| |||||||||||| ||||||| ||||||||| |||| |||||||||    
T  14671139 attcaattcacttttagccataatcaatttcacaaaatcaattcattcaaaatcattttttgtcaatgcaaaaccaaaca 14671218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 7667605 - 7667644
Alignment:
Q  10 agaattgattctaacttgaagctagaatttgaaacttttg 49  Q
    ||||||||||||||||||||||||||||||| | ||||||    
T  7667605 agaattgattctaacttgaagctagaatttggagcttttg 7667644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 10373025 - 10373076
Alignment:
Q  164 tttacagaatcaattcatttaaaatcagtttttgtcactgcagaaccaaaca 215  Q
    |||||| ||| |||||||||||||||| |||||||||| | |||||||||||    
T  10373025 tttacaaaattaattcatttaaaatcaatttttgtcacagtagaaccaaaca 10373076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 10860445 - 10860387
Alignment:
Q  9 tagaattgattctaacttgaagctagaatttgaaacttttgcctctacacgttgattttt 68  Q
    ||||| ||||||| |||||||||||||||||| | |||||||||||| | ||||||||||    
T  10860445 tagaagtgattctgacttgaagctagaatttgtagcttttgcctctaga-gttgattttt 10860387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 217
Target Start/End: Original strand, 9505886 - 9505966
Alignment:
Q  137 ttcaactcaattttatgcataatcaactttacagaatcaattcatttaaaatcagtttttgtcactgcagaaccaaacaca 217  Q
    |||||||||||||||  || ||| |||||||||||||||||||||| ||||||| |||||| ||| ||| | |||||||||    
T  9505886 ttcaactcaattttagccaaaataaactttacagaatcaattcattcaaaatcaatttttgacaccgcaaatccaaacaca 9505966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 216
Target Start/End: Complemental strand, 19260853 - 19260773
Alignment:
Q  136 attcaactcaattttatgcataatcaactttacagaatcaattcatttaaaatcagtttttgtcactgcagaaccaaacac 216  Q
    ||||||||||||||||  || |||||| ||||||||| ||| ||||| ||||||| |||||||||| ||| ||||||||||    
T  19260853 attcaactcaattttagccagaatcaattttacagaaccaaatcattcaaaatcattttttgtcaccgcacaaccaaacac 19260773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 6214855 - 6214808
Alignment:
Q  10 agaattgattctaacttgaagctagaatttgaaacttttgcctctaca 57  Q
    ||||| |||||||||||||||||||| |||| ||||||||||||||||    
T  6214855 agaatcgattctaacttgaagctagagtttggaacttttgcctctaca 6214808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 13687753 - 13687797
Alignment:
Q  175 aattcatttaaaatcagtttttgtcactgcagaaccaaacacact 219  Q
    |||||||| |||||||||||||||||| ||||||| |||||||||    
T  13687753 aattcattcaaaatcagtttttgtcaccgcagaactaaacacact 13687797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 218
Target Start/End: Original strand, 3525040 - 3525123
Alignment:
Q  136 attcaactcaattttatgcataatcaactttacagaatcaattcatttaaaa-tcagtttttgtcactgcagaaccaaacacac 218  Q
    |||||||||| |||||  || |||||| |||||| |||||||||||| |||| | | ||||| | |||||||||||||||||||    
T  3525040 attcaactcacttttagccacaatcaattttacataatcaattcattcaaaattaattttttttaactgcagaaccaaacacac 3525123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 10055012 - 10054952
Alignment:
Q  158 atcaactttacagaatcaattcatttaaaatcagtttttgtcactgcagaaccaaacacac 218  Q
    ||||| |||||| || ||||||||| |||||||  ||||||||| ||| ||||||||||||    
T  10055012 atcaattttacaaaaccaattcattcaaaatcaacttttgtcaccgcaaaaccaaacacac 10054952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 40491694 - 40491772
Alignment:
Q  137 ttcaactcaattttatgcataatcaactttacagaatcaattcatttaaaatcagtttttgtcactgcagaaccaaaca 215  Q
    ||||||||| |||||  || |||||| ||||||||||||||||| | ||||||| || ||||||| |||||||||||||    
T  40491694 ttcaactcacttttagtcaaaatcaattttacagaatcaattcactcaaaatcaattcttgtcaccgcagaaccaaaca 40491772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 45369157 - 45369203
Alignment:
Q  9 tagaattgattctaacttgaagctagaatttgaaacttttgcctcta 55  Q
    ||||||||||| |||||||||||||||||| | | ||||||||||||    
T  45369157 tagaattgattttaacttgaagctagaattcggagcttttgcctcta 45369203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 900 - 845
Alignment:
Q  157 aatcaactttacagaatcaattcatttaaaatcagtttttgtcactgcagaaccaa 212  Q
    |||||| |||| |||||||||||||||||||||| ||||||||||| | |||||||    
T  900 aatcaattttagagaatcaattcatttaaaatcaatttttgtcactactgaaccaa 845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 1035 - 990
Alignment:
Q  12 aattgattctaacttgaagctagaatttgaaacttttgcctctaca 57  Q
    |||||||||||||| ||||||||||||||||  |||| ||||||||    
T  1035 aattgattctaactagaagctagaatttgaagtttttacctctaca 990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 213
Target Start/End: Original strand, 6744974 - 6745024
Alignment:
Q  163 ctttacagaatcaattcatttaaaatcagtttttgtcactgcagaaccaaa 213  Q
    ||||||| |||||||||||| ||||||  ||||||||||||||||||||||    
T  6744974 ctttacataatcaattcattcaaaatcgatttttgtcactgcagaaccaaa 6745024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 43541636 - 43541582
Alignment:
Q  164 tttacagaatcaattcatttaaaatcagtttttgtcactgcagaaccaaacacac 218  Q
    ||||||||||||||||||| | ||||| |||||||||| ||| ||||||||||||    
T  43541636 tttacagaatcaattcattcagaatcaatttttgtcaccgcataaccaaacacac 43541582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 48490552 - 48490594
Alignment:
Q  10 agaattgattctaacttgaagctagaatttgaaacttttgcct 52  Q
    |||||||||| ||||| |||| |||||||||||||||||||||    
T  48490552 agaattgattataactcgaagttagaatttgaaacttttgcct 48490594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 6932136 - 6932092
Alignment:
Q  168 cagaatcaattcatttaaaatcagtttttgtcactgcagaaccaa 212  Q
    ||||||||||||||| |||||||  ||||||||| ||||||||||    
T  6932136 cagaatcaattcattcaaaatcaaattttgtcaccgcagaaccaa 6932092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 215
Target Start/End: Complemental strand, 18325359 - 18325282
Alignment:
Q  136 attcaactcaattttatgcataatcaactttacagaatcaattcatttaaaatcagtttttgtcactgcagaaccaaaca 215  Q
    |||||||||| ||||||| | |||||| |||||| || ||||||||  |||| || |||||||||| | |||||||||||    
T  18325359 attcaactcacttttatgtaaaatcaattttacaaaaccaattcat--aaaaccaatttttgtcaccgtagaaccaaaca 18325282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 24697683 - 24697643
Alignment:
Q  14 ttgattctaacttgaagctagaatttgaaacttttgcctct 54  Q
    ||||||||||||||||  ||||||||||| |||||||||||    
T  24697683 ttgattctaacttgaaattagaatttgaagcttttgcctct 24697643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 6925831 - 6925880
Alignment:
Q  154 cataatcaactttacagaatcaattcatttaaaatcagtttttgtcactg 203  Q
    ||||||||| |||| ||||||||||||||||||||||  |||||||||||    
T  6925831 cataatcaattttagagaatcaattcatttaaaatcaacttttgtcactg 6925880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 38129455 - 38129402
Alignment:
Q  164 tttacagaatcaattcatttaaaatcagtttttgtcactgcagaaccaaacaca 217  Q
    ||||||||||||||||||| ||||||| |||||||| |  ||||||||||||||    
T  38129455 tttacagaatcaattcattcaaaatcaatttttgtcgcaacagaaccaaacaca 38129402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 6767673 - 6767717
Alignment:
Q  13 attgattctaacttgaagctagaatttgaaacttttgcctctaca 57  Q
    |||||||||||||||||||||||||||| | ||||||| ||||||    
T  6767673 attgattctaacttgaagctagaatttggagcttttgcttctaca 6767717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 29968956 - 29968908
Alignment:
Q  171 aatcaattcatttaaaatcagtttttgtcactgcagaaccaaacacact 219  Q
    |||||||||||| |||||||||||||||||||  |||| ||||||||||    
T  29968956 aatcaattcattcaaaatcagtttttgtcactcaagaatcaaacacact 29968908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 215
Target Start/End: Complemental strand, 3476381 - 3476334
Alignment:
Q  168 cagaatcaattcatttaaaatcagtttttgtcactgcagaaccaaaca 215  Q
    ||||||||||||| ||||||||| ||||||||||  ||||||||||||    
T  3476381 cagaatcaattcacttaaaatcaatttttgtcaccacagaaccaaaca 3476334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 39
Target Start/End: Complemental strand, 33502938 - 33502909
Alignment:
Q  10 agaattgattctaacttgaagctagaattt 39  Q
    ||||||||||||||||||||||||||||||    
T  33502938 agaattgattctaacttgaagctagaattt 33502909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 49634128 - 49634084
Alignment:
Q  11 gaattgattctaacttgaagctagaatttgaaacttttgcctcta 55  Q
    |||||||||||||||||||||||| ||||| | ||||||||||||    
T  49634128 gaattgattctaacttgaagctaggatttgtagcttttgcctcta 49634084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 218
Target Start/End: Original strand, 24916599 - 24916681
Alignment:
Q  136 attcaactcaattttatgcataatcaactttacagaatcaattcatttaaaatcagtttttgtcactgcagaaccaaacacac 218  Q
    |||||||||| |||||  |  |||||| |||||| |||||| || || ||||| | |||||||||| ||||||||||||||||    
T  24916599 attcaactcacttttagcctgaatcaattttacaaaatcaactcgttcaaaattaatttttgtcaccgcagaaccaaacacac 24916681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 218
Target Start/End: Complemental strand, 25129509 - 25129427
Alignment:
Q  136 attcaactcaattttatgcataatcaactttacagaatcaattcatttaaaatcagtttttgtcactgcagaaccaaacacac 218  Q
    |||||||||| |||||| |  |||||| ||||||  ||||||||||| || |||| ||| |||||||  ||||||||||||||    
T  25129509 attcaactcacttttatcctgaatcaattttacaacatcaattcattcaagatcaatttatgtcactagagaaccaaacacac 25129427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 30243933 - 30243989
Alignment:
Q  12 aattgattctaacttgaagctagaatttgaaacttttgcctctacacgttgattttt 68  Q
    |||||||||||||||||||||||||| | || ||| ||| ||||||  |||||||||    
T  30243933 aattgattctaacttgaagctagaatcttaagcttctgcatctacaaattgattttt 30243989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 31012904 - 31012860
Alignment:
Q  171 aatcaattcatttaaaatcagtttttgtcactgcagaaccaaaca 215  Q
    |||||||||||| ||||||| ||||| |||||||||| |||||||    
T  31012904 aatcaattcattcaaaatcaatttttttcactgcagatccaaaca 31012860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 18597035 - 18597074
Alignment:
Q  10 agaattgattctaacttgaagctagaatttgaaacttttg 49  Q
    |||||||||||||||||||||||| |||||||| ||||||    
T  18597035 agaattgattctaacttgaagctataatttgaaccttttg 18597074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 23104704 - 23104759
Alignment:
Q  157 aatcaactttacagaatcaattcatttaaaatcagtttttgtcactgcagaaccaa 212  Q
    |||||| |||||| |||||||||||||||||| | |||||||||| ||| ||||||    
T  23104704 aatcaattttacataatcaattcatttaaaattaatttttgtcaccgcataaccaa 23104759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 46012706 - 46012671
Alignment:
Q  4 tcaaatagaattgattctaacttgaagctagaattt 39  Q
    |||| |||||||||||||||||||||||||||||||    
T  46012706 tcaagtagaattgattctaacttgaagctagaattt 46012671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 213
Target Start/End: Original strand, 22684000 - 22684042
Alignment:
Q  171 aatcaattcatttaaaatcagtttttgtcactgcagaaccaaa 213  Q
    ||||||||||| |||||||  ||||||||||||||||||||||    
T  22684000 aatcaattcatctaaaatctatttttgtcactgcagaaccaaa 22684042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 38740343 - 38740290
Alignment:
Q  137 ttcaactcaattttatgcataatcaactttacagaatcaattcatttaaaatca 190  Q
    ||||||||| |||||| || |||||| |||||| |||||||||||| |||||||    
T  38740343 ttcaactcacttttatccaaaatcaattttacaaaatcaattcattcaaaatca 38740290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 51093256 - 51093300
Alignment:
Q  12 aattgattctaacttgaagctagaatttgaaacttttgcctctaca 57  Q
    |||||||||||||| |||||||||||||| | ||||||||||||||    
T  51093256 aattgattctaact-gaagctagaatttggagcttttgcctctaca 51093300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 17897843 - 17897799
Alignment:
Q  171 aatcaattcatttaaaatcagtttttgtcactgcagaaccaaaca 215  Q
    |||||||||| | ||||||| |||||||||| |||||||||||||    
T  17897843 aatcaattcactcaaaatcaatttttgtcaccgcagaaccaaaca 17897799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 218
Target Start/End: Original strand, 18597176 - 18597208
Alignment:
Q  186 aatcagtttttgtcactgcagaaccaaacacac 218  Q
    ||||| |||||||||||||||||||||||||||    
T  18597176 aatcaatttttgtcactgcagaaccaaacacac 18597208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 29468719 - 29468664
Alignment:
Q  12 aattgattctaacttgaagctagaatttgaaacttttgcctctacacgttgattttt 68  Q
    ||||||||||| ||||||||||||| |||||| | || ||||||||| |||||||||    
T  29468719 aattgattctatcttgaagctagaaattgaaattgttccctctacac-ttgattttt 29468664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 35775536 - 35775586
Alignment:
Q  164 tttacagaatcaattcatttaaaatcagtttttgtcactgcagaaccaaac 214  Q
    |||| |||||||||||||||||||| | ||||||||||  |||||||||||    
T  35775536 tttatagaatcaattcatttaaaattaatttttgtcacctcagaaccaaac 35775586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 8017169 - 8017205
Alignment:
Q  12 aattgattctaacttgaagctagaatttgaaactttt 48  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  8017169 aattggttcttacttgaagctagaatttgaaactttt 8017205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 14093080 - 14093024
Alignment:
Q  157 aatcaactttacagaatcaattcatttaaaatcagtttttgtcactgcagaaccaaa 213  Q
    |||||| |||||| |||||||||| ||| ||| | |||||||||||||| |||||||    
T  14093080 aatcaattttacataatcaattcaattacaataaatttttgtcactgcataaccaaa 14093024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0695 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0695
Description:

Target: scaffold0695; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 213
Target Start/End: Original strand, 3370 - 3426
Alignment:
Q  157 aatcaactttacagaatcaattcatttaaaatcagtttttgtcactgcagaaccaaa 213  Q
    |||||| |||||| |||||||||| ||| ||| | |||||||||||||| |||||||    
T  3370 aatcaattttacataatcaattcaattacaataaatttttgtcactgcataaccaaa 3426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University