View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11694_low_31 (Length: 243)
Name: NF11694_low_31
Description: NF11694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11694_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 17348148 - 17348378
Alignment:
| Q |
1 |
ccaacatttccactaatctctgatactgacccttgtcaactttggcactttcctcctcaaggcatatcctgcaatttttctcaatggaaagacttgtagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17348148 |
ccaacatttccactaatctctgatactgacccttgtcaactttggcactttcctcctcaaggcatatcctgcaatttttctcaatggaaagacttgtagg |
17348247 |
T |
|
| Q |
101 |
tttgcatccaagttttattatttcatacaaaagatcaaatacatactttctctaagatatataaatgcctttctttgagtaggttgccaattcacaagaa |
200 |
Q |
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|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
17348248 |
tttgcatcaaagttttattatttcatgcaaaagatcaaatacatactttctctaagacatataaatgcctttctttgagtaggttgccaattcaca---- |
17348343 |
T |
|
| Q |
201 |
atagaaatacttaagttaaccaaggtctttcatctca |
237 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
17348344 |
--agaaatacttaagttaaccaaggtctttcatctca |
17348378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 115
Target Start/End: Complemental strand, 27471361 - 27471248
Alignment:
| Q |
2 |
caacatttccactaatctctgatactgacccttgtcaactttggcactttcctcctcaaggcatatcctgcaatttttctcaatggaaagacttgtaggt |
101 |
Q |
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|||| ||||||||||||||| |||| ||||||||||||||||||| ||||||||||| | | ||||||| |||||| ||||||||| | ||||| |||| |
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| T |
27471361 |
caacttttccactaatctctaataccgacccttgtcaactttggcgctttcctcctcgaaacttatcctgtaattttactcaatggagacacttgcaggt |
27471262 |
T |
|
| Q |
102 |
ttgcatccaagttt |
115 |
Q |
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| T |
27471261 |
ttacatccaagttt |
27471248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 153
Target Start/End: Complemental strand, 44834019 - 44833985
Alignment:
| Q |
119 |
tatttcatacaaaagatcaaatacatactttctct |
153 |
Q |
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|||||| |||||||||||||||||||||||||||| |
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| T |
44834019 |
tatttcctacaaaagatcaaatacatactttctct |
44833985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 138
Target Start/End: Complemental strand, 39779416 - 39779290
Alignment:
| Q |
11 |
cactaatctctgatactgacccttgtcaactttggcactttcctcctcaaggcatatcctgcaatttttctcaatggaaagacttgtaggtttgcatcca |
110 |
Q |
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| T |
39779416 |
cactaatctttgatattaacccttgttaagtttggcactttcctcctcaaa-cttattccgtgattgttctcaatgggaacacttgcaggtttacatcca |
39779318 |
T |
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| Q |
111 |
agttttattatttcatacaaaagatcaa |
138 |
Q |
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|||||| ||||||| | ||||||||||| |
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| T |
39779317 |
agttttcttatttcctgcaaaagatcaa |
39779290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 182
Target Start/End: Complemental strand, 40747212 - 40747041
Alignment:
| Q |
11 |
cactaatctctgatactgacccttgtcaactttggcactttcctcctcaaggcatatcctgcaatttttctcaatggaaagacttgtaggtttgcatcca |
110 |
Q |
| |
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|||||| || ||||||| ||||| ||||||||||||| |||| ||||||| || | | || ||||| |||| |||||| ||||||| |||||||| || |
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| T |
40747212 |
cactaacctttgatactaaccctagtcaactttggcattttcttcctcaaagcccaacttgtgattttactcattggaaacacttgtaagtttgcattca |
40747113 |
T |
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| Q |
111 |
agttttattatttcatacaaaagatcaaatacatactttctctaagatatataaatgcctttctttgagtag |
182 |
Q |
| |
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|| ||| |||||| | |||| ||| ||| ||||| ||||||||||| ||| ||| || || ||||||||| |
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| T |
40747112 |
aggtttcctatttcctgcaaacgattaaacacataatttctctaagagatagaaaagcattgttttgagtag |
40747041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 116
Target Start/End: Original strand, 27914396 - 27914483
Alignment:
| Q |
29 |
acccttgtcaactttggcactttcctcctcaaggcatatcctgcaatttttctcaatggaaagacttgtaggtttgcatccaagtttt |
116 |
Q |
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|||||||||||||||||||||||| ||||||| || | | || |||||||||||||| || ||| ||||||||||| | ||||||| |
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| T |
27914396 |
acccttgtcaactttggcactttcatcctcaaagctcaccttgttatttttctcaatgggaacactcgtaggtttgcaacgaagtttt |
27914483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 25485531 - 25485479
Alignment:
| Q |
128 |
caaaagatcaaatacatactttctctaagatatataaatgcctttctttgagt |
180 |
Q |
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|||||||| || |||||||||||||| ||| ||| |||| ||||||||||||| |
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| T |
25485531 |
caaaagattaagtacatactttctcttagagataaaaattcctttctttgagt |
25485479 |
T |
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