View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11694_low_32 (Length: 238)

Name: NF11694_low_32
Description: NF11694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11694_low_32
NF11694_low_32
[»] chr1 (3 HSPs)
chr1 (1-224)||(15008530-15008753)
chr1 (1-224)||(15022647-15022870)
chr1 (1-224)||(15029716-15029951)


Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 15008530 - 15008753
Alignment:
Q  1 ccaacataataattgaaaaagacctggtacccggacaggaaagccgtaaaagattacaatatgatgcatgaaaccaataccaaacataatgttaactaaa 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15008530 ccaacataataattgaaaaagacctagtacccggacaggaaagccgtaaaagattacaatatgatgcatgaaaccaatacgaaacataatgttaactaaa 15008629  T
Q  101 tggaaaatctacattataagcttggaaacaatgcaacaacccgtgaacaacagcagaaaaatgtagtacaaaaatctagatttaattcatactctaagag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  15008630 tggaaaatctacattataagcttggaaacaatgcaacaacccgtgaacaacagcagaaaaatgtagcacaaaaatctagatttaattcatactctaagag 15008729  T
Q  201 aagtaaaaaatatagtacaaattg 224  Q
    ||||||||||||||||||||||||    
T  15008730 aagtaaaaaatatagtacaaattg 15008753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 15022647 - 15022870
Alignment:
Q  1 ccaacataataattgaaaaagacctggtacccggacaggaaagccgtaaaagattacaatatgatgcatgaaaccaataccaaacataatgttaactaaa 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15022647 ccaacataataattgaaaaagacctagtacccggacaggaaagccgtaaaagattacaatatgatgcatgaaaccaatacgaaacataatgttaactaaa 15022746  T
Q  101 tggaaaatctacattataagcttggaaacaatgcaacaacccgtgaacaacagcagaaaaatgtagtacaaaaatctagatttaattcatactctaagag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  15022747 tggaaaatctacattataagcttggaaacaatgcaacaacccgtgaacaacagcagaaaaatgtagcacaaaaatctagatttaattcatactctaagag 15022846  T
Q  201 aagtaaaaaatatagtacaaattg 224  Q
    ||||||||||||||||||||||||    
T  15022847 aagtaaaaaatatagtacaaattg 15022870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 15029716 - 15029951
Alignment:
Q  1 ccaacataataattgaaaaagacctggtacccgga-caggaaagccgtaaaagattacaatatgatgcatgaaaccaataccaaacataatgttaactaa 99  Q
    |||||||||||||||||| ||||||   ||||| | ||| ||| ||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||    
T  15029716 ccaacataataattgaaagagaccttacacccgtaacagaaaatccgtaaaagattacaacttgatgcatgaaacgaataccaaacataatgttaactaa 15029815  T
Q  100 atggaaaatctacattataagcttggaaacaat-----------gcaacaacccgtgaacaacagcagaaaaatgtagtacaaaaatctagatttaattc 188  Q
    ||||||||||||||||||||| ||||| |||||           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  15029816 atggaaaatctacattataaggttggacacaatgcaacaagtcggcaacaacccgtgaacaacagcagaaaaatgtagtacaaaaatctatatttaattc 15029915  T
Q  189 atactctaagagaagtaaaaaatatagtacaaattg 224  Q
    |||||||||||||| ||||||||  |||||||||||    
T  15029916 atactctaagagaaataaaaaatgcagtacaaattg 15029951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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