View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11694_low_34 (Length: 227)
Name: NF11694_low_34
Description: NF11694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11694_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 32313761 - 32313971
Alignment:
| Q |
1 |
caaacatttaattaagtttgtattttaagtctgaattattaaactgacaatatgagttcataaatgtatcatatattagtataacatcagagataaataa |
100 |
Q |
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| T |
32313761 |
caaacatttaattaagtttgtagtttaagtctgaattattaaactgacaatatgagttcataaatgtatcatatattagtataacatcagagataaataa |
32313860 |
T |
|
| Q |
101 |
gcttgtatgatccaggaaaggtgactattatcgatatcttgctgagttcaagaacgatcaagataggaaggaggcagctgatcagtcactgaaggcatat |
200 |
Q |
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| T |
32313861 |
gcttgtatgatccaggaaaggtgactattatcgatatcttgctgagttcaagaacgatcaagataggaaggaggcagctgatcagtcactgaaggcatat |
32313960 |
T |
|
| Q |
201 |
gaggttagtat |
211 |
Q |
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||||||||||| |
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| T |
32313961 |
gaggttagtat |
32313971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 212
Target Start/End: Original strand, 19415613 - 19415717
Alignment:
| Q |
108 |
tgatccaggaaaggtgactattatcgatatcttgctgagttcaagaacgatcaagataggaaggaggcagctgatcagtcactgaaggcatatgaggtta |
207 |
Q |
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|||| |||||||||||| |||| || ||||||||||||||||||| || ||||| || || ||||| ||||| ||||||||||| | ||| |||||| |
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| T |
19415613 |
tgattcaggaaaggtgattatttccggtatcttgctgagttcaagactgaccaagaaagaaaagaggctgctgagcagtcactgaaaggatacgaggttt |
19415712 |
T |
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| Q |
208 |
gtatt |
212 |
Q |
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| T |
19415713 |
gtatt |
19415717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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