View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11694_low_4 (Length: 573)
Name: NF11694_low_4
Description: NF11694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11694_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-150; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 37 - 390
Target Start/End: Complemental strand, 38943867 - 38943515
Alignment:
| Q |
37 |
ttttcattttctaccttctagataatgagtttgaataacatgagatagaaatcgaggttgggattagtaaaaatcaaagggaattcacagattttattct |
136 |
Q |
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| T |
38943867 |
ttttcattttctaccttatagataatgagtttgaataacatgagatagaaatcgaggttgggattagtaaaaatcaaagggaattcacggattttgttct |
38943768 |
T |
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| Q |
137 |
ctgtctgtttgtgttgagagacttaattttggcaaaattaattcacgtcatgtgttttgaatttcatatttgttagtgtagataagtgataaaataatgc |
236 |
Q |
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| T |
38943767 |
ttgcccgtttgtgttgagagatttcattttggcaaatctaatccacgtcatgtattttgaatttcatatttgttagtgtagataagtgataaaataatgt |
38943668 |
T |
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| Q |
237 |
tgtttttcatattttgaatttcaataactctttcaaaagagaatagccaaattgtttactgttgaaacaccaacttagtgagttcggttttcactcaatt |
336 |
Q |
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| T |
38943667 |
tgcttttcatattttgaatttcaataactctttcaaaagagaatagccaaattgttaactgttgaaacaccaatttagtgagttcagttttcactcaatt |
38943568 |
T |
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| Q |
337 |
gtttaacttggttttgtcatattcaattgccttttttccgcaaaaatctgttgt |
390 |
Q |
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| T |
38943567 |
gtttaacttggttttgtcagattcaattgcct-ttttctgcaaaaatctgttgt |
38943515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 389 - 482
Target Start/End: Complemental strand, 38943330 - 38943237
Alignment:
| Q |
389 |
gttgcagataaggcatttgtctataatgtgatgaatataactaggctcttgatcaatcctgacattcaagaggctcttcaattgaagaatgggt |
482 |
Q |
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| T |
38943330 |
gttgcatataaggcatttgtgcagaatgtgatgaatataactaggctcttgatcaatcctgacattccagaggctcttcaattgaagaatgggt |
38943237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 488 - 556
Target Start/End: Complemental strand, 38943191 - 38943123
Alignment:
| Q |
488 |
ttttctgatgtaaatgtcattgtatatcaattgttgtgacgtgtgtgctatatttctgggtgggctttg |
556 |
Q |
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| T |
38943191 |
ttttctgatgtagatgttactgtatatcaattgttgtgacgcgtgtgttatatttctgggtgggctttg |
38943123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 170
Target Start/End: Complemental strand, 49363637 - 49363558
Alignment:
| Q |
90 |
gaggttgggattagtaaaaatcaaagggaattcacagattttattctctgt-ctgtttgtgttgagagacttaattttggca |
170 |
Q |
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| T |
49363637 |
gaggttgggatacgtaaaaatcaaagggaattcacagattt--tgctctgtcctccttgtgttgggagacttaatattggca |
49363558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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