View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11694_low_5 (Length: 533)
Name: NF11694_low_5
Description: NF11694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11694_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 473; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 18 - 520
Target Start/End: Original strand, 1581052 - 1581550
Alignment:
| Q |
18 |
agtgattgtgttggacccttcttttagagagttcacaatgtctttgaggaagtggggcaaaagtctttacagtcttgtacaagattggaaacatgttatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1581052 |
agtgattgtgttggacccttcttttagagagttcacaatgtctttgaggaagtggggcaaaagtctttacagtcttgtacaagattggaaacatgttatg |
1581151 |
T |
|
| Q |
118 |
aggcaaaatagttttgaaattggtcaaaaactcaacatttggacatttagggtcaatagcaagttgcactttctactcgacaaaaattaggtaatagcta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1581152 |
aggcaaaatagttttgaaattggtcaaaaactcaacatttggacatttagggtcaatagcaagttgcactttctactcgacaaaaattaggtaatagcta |
1581251 |
T |
|
| Q |
218 |
taaacttgtttatttgtttctgcatttaactctactttgtttatgcgattctggaagcttgatgaagaagactttgaaatagtttataaggagatggacc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1581252 |
taaacttgtttatttgtttctgcatttaactgtactttgtttatgcgattctggaagcttgatgaagaagac-ttgaaatagtttataaggagatggacc |
1581350 |
T |
|
| Q |
318 |
agtatcagcctcttgaagaattagtcttacctagctaggaagaattacattacatagtcctcaagagtttatattggtattcaatttgattatgaacaac |
417 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1581351 |
agtatcagcctctggaagaattagtcttacctagctaggaagaattacattacatagtcctcaagagtttatattggtattcaatttgattatgaacaac |
1581450 |
T |
|
| Q |
418 |
ttgtaaaagtattttattttacaagccacgtagtgtttgagttgtttcttctagttttaagtagttgcatgcaaaatgttttatactgtttacattatta |
517 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1581451 |
ttgtaaaagtatt---ttttacaagccacgtagtgtttgagttgtttcttctagttttaagtagttgcatgcaaaatgttttatactgtttacattatta |
1581547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 18 - 520
Target Start/End: Complemental strand, 1603763 - 1603265
Alignment:
| Q |
18 |
agtgattgtgttggacccttcttttagagagttcacaatgtctttgaggaagtggggcaaaagtctttacagtcttgtacaagattggaaacatgttatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1603763 |
agtgattgtgttggacccttcttttagagagttcacaatgtctttgaggaagtggggcaaaagtctttacagtcttgtacaagattggaaacatgttatg |
1603664 |
T |
|
| Q |
118 |
aggcaaaatagttttgaaattggtcaaaaactcaacatttggacatttagggtcaatagcaagttgcactttctactcgacaaaaattaggtaatagcta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1603663 |
aggcaaaatagttttgaaattggtcaaaaactcaacatttggacatttagggtcaatagcaagttgcactttctactcgacaaaaattaggtaatagcta |
1603564 |
T |
|
| Q |
218 |
taaacttgtttatttgtttctgcatttaactctactttgtttatgcgattctggaagcttgatgaagaagactttgaaatagtttataaggagatggacc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
1603563 |
taaacttgtttatttgtttctgcatttaactgtactttgtttatgcgattctggaagcttgatgaagaagac-ttgaaatagtttataaggagatggacc |
1603465 |
T |
|
| Q |
318 |
agtatcagcctcttgaagaattagtcttacctagctaggaagaattacattacatagtcctcaagagtttatattggtattcaatttgattatgaacaac |
417 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1603464 |
agtatcagcctctggaagaattagtcttacctagctaggaagaattacattacatagtcctcaagagtttatattggtattcaatttgattatgaacaac |
1603365 |
T |
|
| Q |
418 |
ttgtaaaagtattttattttacaagccacgtagtgtttgagttgtttcttctagttttaagtagttgcatgcaaaatgttttatactgtttacattatta |
517 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1603364 |
ttgtaaaagtatt---ttttacaagccacgtagtgtttgagttgtttcttctagttttaagtagttgcatgcaaaatgttttatactgtttacattatta |
1603268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 1587525 - 1587763
Alignment:
| Q |
18 |
agtgattgtgttggacccttcttttagagagttcacaatgtctttgaggaagtggggc----------aaaagtctttacagtcttgtacaagattggaa |
107 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || | |||| |||||||||| ||| | |||||| |
|
|
| T |
1587525 |
agtgactgtgttggacccttcttttagagagttcacaatgtctttgaggaagtggagcatgggaactaacaagt-attacagtcttctacgtggttggaa |
1587623 |
T |
|
| Q |
108 |
acatgttatgaggcaaaatagttttgaaattggtcaaaaactcaacatttggacatttagggtcaatagcaagttgcactttctactcgacaaaaattag |
207 |
Q |
| |
|
| |||| |||| ||||||||||| ||| ||| ||||||||||||| ||||| |||||||||||| ||||||||||||| |||| ||||| || || |
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|
| T |
1587624 |
aactgttgtgagcaaaaatagttttaaaaagggtaaaaaactcaacatctggacttttagggtcaatgacaagttgcactttgtacttgacaataaccag |
1587723 |
T |
|
| Q |
208 |
gtaatagctataaacttgtttatttgtttctgcatttaact |
248 |
Q |
| |
|
|| || | |||||||| ||||||| ||||||||||||||| |
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|
| T |
1587724 |
gtgat-gttataaactcgtttattattttctgcatttaact |
1587763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 1590698 - 1590654
Alignment:
| Q |
18 |
agtgattgtgttggacccttcttttagagagttcacaatgtcttt |
62 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1590698 |
agtgattgtgttggacccttcttttagagagttcagaatgtcttt |
1590654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 500
Target Start/End: Complemental strand, 1613920 - 1613865
Alignment:
| Q |
444 |
cacgtagtgtttgagttgtttcttctagttttaagtagttgcatgcaaaatgtttta |
500 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||| | ||||| ||||||||||| |
|
|
| T |
1613920 |
cacgtagt-tttgagttgattcttctagttttaagttgctgcataaaaaatgtttta |
1613865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 83 - 271
Target Start/End: Complemental strand, 39615859 - 39615670
Alignment:
| Q |
83 |
tttacagtcttgtacaagattggaaacatgttatgaggcaaaatagttttgaaattggtcaaaaactcaacatttggacatttagggtcaatagcaagtt |
182 |
Q |
| |
|
||||||||||| ||||| |||||||||||| | ||||| |||| |||||||||| ||||||| ||||||| ||||| ||||||||||||| |||||| |
|
|
| T |
39615859 |
tttacagtcttatacaaaattggaaacatgctgtgaggggaaatggttttgaaataggtcaaatactcaacgtttggtcatttagggtcaaggacaagtt |
39615760 |
T |
|
| Q |
183 |
gcactttctactcgacaaaaattaggtaatagctataaacttgtttatttgtttctgcatttaact-ctactttgtttatgcgattctgg |
271 |
Q |
| |
|
||| ||| ||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
39615759 |
gcagtttgtactcaacattaattaggtaatagctataaacttgtttatttctttctgcatttaactagtactttgtttatgcgtttctgg |
39615670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 19270260 - 19270025
Alignment:
| Q |
18 |
agtgattgtgttggacccttcttttagagagttcacaatgtctttgaggaagtggggcaa----------aagtctttacagtcttgtacaagattggaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| || ||||||||||||| | |||||| |
|
|
| T |
19270260 |
agtgattgtgttggacccttcttttagagagttcacaatgtcgttgaggaagtggagcatgggcattaacaagtatt-acagtcttgtacatggttggaa |
19270162 |
T |
|
| Q |
108 |
acatgttatgaggcaaaatagttttgaaattggtcaaaaactcaacatttggacatttagggtcaatagcaagttgcactttctactcgacaaaaattag |
207 |
Q |
| |
|
| |||| |||| ||||||||||||||| ||| ||||||| ||||| ||||| |||||||||||| ||||||||||||| |||||||||| ||| || |
|
|
| T |
19270161 |
aactgttgtgagcaaaaatagttttgaaaagggtaaaaaacttaacatctggacttttagggtcaatgacaagttgcactttgtactcgacaataatcag |
19270062 |
T |
|
| Q |
208 |
gtaatagctataaacttgtttatttgtttctgcattta |
245 |
Q |
| |
|
|| || | ||||||| ||||||| |||||||||||| |
|
|
| T |
19270061 |
gtgat-gttataaacgcgtttattattttctgcattta |
19270025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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