View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11695_low_1 (Length: 315)
Name: NF11695_low_1
Description: NF11695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11695_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 4458281 - 4458013
Alignment:
| Q |
1 |
aatcttaatgaagtggaaatagtgttcgaactctataattgaagaatcggagtatgtaccattgactcatgaagaaagggggagcttgagacattgattg |
100 |
Q |
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||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
4458281 |
aatcttaatgaagtggaaatatttgtcgaacactataattgaagaatcggagtatgtaccattgactcatgaagaaagggggagcttgagagattggttg |
4458182 |
T |
|
| Q |
101 |
aataggctactactaaacaaaatactaagaaacctgaattggaacatcctattagtgttgatattttgaatgttaaggcttcctagcgtctccattgtcg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||| |||||||||||||||||||||||||||||| |
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| T |
4458181 |
aataggctactactaaacaaaatactaagaaacctgaattgtaacatcctattagtgttgacatattgagtgttaaggcttcctagcgtctccattgtcg |
4458082 |
T |
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| Q |
201 |
atgttcttaagcaatgagtcaaccttgtccatcaatcttgctcttcagaccttttcaccagtttcattc |
269 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
4458081 |
ctgttcttaagcaaagagtcaaccttgtccatcaatcttgcttttcggaccttttcaccagtttcattc |
4458013 |
T |
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