View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11696_low_2 (Length: 291)
Name: NF11696_low_2
Description: NF11696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11696_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 19 - 287
Target Start/End: Original strand, 5858908 - 5859176
Alignment:
| Q |
19 |
agattcttgtactaataatacacaaaaatggattcaactttggcttacatcattgtcctctttcttcttaccttattttcatttaagttctttccaaaac |
118 |
Q |
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| T |
5858908 |
agattcttgtactaataatacacaaaaatggattcaactttggcttacatcattgtcctctttcttcttaccttattttcatttaagttctttccaaaac |
5859007 |
T |
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| Q |
119 |
gacctaaaacaaaacaaacaagtgcaaaacttcctcctggttcaatggggtggccgtacataggacaaacccttcaactctactcccaagacccaaatgt |
218 |
Q |
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| T |
5859008 |
gacctaaaacaaaacaaacaagtgcaaaacttcctcctggttcaatggggtggccgtacataggacaaacccttcaactctactcccaagacccaaatgt |
5859107 |
T |
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| Q |
219 |
tttcttcttctccaaacaaaaaaggttgctatgctacctatgtagttccactccacctctctgcttctc |
287 |
Q |
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| T |
5859108 |
tttcttcttctccaaacaaaaaaggttgctatgctacctatctagttccactccatctccatgcttctc |
5859176 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 10422675 - 10422745
Alignment:
| Q |
154 |
cctggttcaatggggtggccgtacataggacaaacccttcaactctactcccaagacccaaatgttttctt |
224 |
Q |
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| T |
10422675 |
cctggttcaatgggttggccttacataggagaaacttttcaactttattctcaagaccctaatgtcttctt |
10422745 |
T |
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