View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11696_low_3 (Length: 225)
Name: NF11696_low_3
Description: NF11696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11696_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 2700620 - 2700830
Alignment:
| Q |
1 |
aagatagcccatagaagagtatagcaccacacatta----tatatcttttactaattaaggaccaacataattagcatcacaaaactatggttttaggtt |
96 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2700620 |
aagatagcacatacaagagtatagcaccacacattaattatatatcttttactaattaaggaccaacataattagcatcacaaaactatggttttaggct |
2700719 |
T |
|
| Q |
97 |
aaacaaatctaataattgccaattaattataacaacaacaataacaacnnnnnnntctaatttaaattttattgaaaaacatctatgttttgtaaaacat |
196 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2700720 |
aaacaaatctaataattgccaattaaatataacaacaacaataacaacaaaaaaatctaatttaaattttattgaaaaacatctatgttttgtaaaacat |
2700819 |
T |
|
| Q |
197 |
actcacaaaac |
207 |
Q |
| |
|
||||||||||| |
|
|
| T |
2700820 |
actcacaaaac |
2700830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 124
Target Start/End: Original strand, 10843231 - 10843325
Alignment:
| Q |
31 |
acattatatatcttttactaattaa-ggaccaacataattagcatcacaaaactatggttttaggttaaacaaatctaataattgccaattaatt |
124 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||| ||||||||| || |||||||||| ||| | |||| | ||| || ||||||||| |
|
|
| T |
10843231 |
acattatatatcttttattaatttgtggaccaacataattatcatcacaaatctctggttttaggctaatctaatccattaactgtcaattaatt |
10843325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University