View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11697_high_1 (Length: 490)

Name: NF11697_high_1
Description: NF11697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11697_high_1
NF11697_high_1
[»] chr4 (15 HSPs)
chr4 (5-459)||(41860409-41860863)
chr4 (5-459)||(52681467-52681921)
chr4 (85-326)||(30576448-30576688)
chr4 (302-456)||(15056967-15057124)
chr4 (199-295)||(14991327-14991423)
chr4 (277-323)||(47964110-47964156)
chr4 (453-489)||(41861939-41861975)
chr4 (453-489)||(41862030-41862066)
chr4 (453-489)||(41862121-41862157)
chr4 (453-489)||(41862212-41862248)
chr4 (453-489)||(41862403-41862439)
chr4 (453-489)||(41946638-41946674)
chr4 (453-489)||(41946729-41946765)
chr4 (453-489)||(52680359-52680395)
chr4 (453-489)||(53285696-53285732)
[»] chr8 (2 HSPs)
chr8 (5-459)||(14995016-14995470)
chr8 (453-489)||(22732207-22732243)
[»] chr7 (12 HSPs)
chr7 (5-459)||(22005714-22006168)
chr7 (7-459)||(7892490-7892942)
chr7 (68-460)||(3598843-3599241)
chr7 (5-74)||(3595867-3595936)
chr7 (202-321)||(13604144-13604262)
chr7 (453-489)||(3600149-3600185)
chr7 (453-489)||(5090967-5091003)
chr7 (453-489)||(7891382-7891418)
chr7 (453-489)||(13927440-13927476)
chr7 (453-489)||(22004323-22004359)
chr7 (453-489)||(22004514-22004550)
chr7 (453-489)||(22004605-22004641)
[»] chr6 (1 HSPs)
chr6 (5-459)||(3590335-3590789)
[»] chr5 (7 HSPs)
chr5 (5-459)||(32674006-32674460)
chr5 (263-459)||(22636691-22636891)
chr5 (228-321)||(21122329-21122422)
chr5 (453-489)||(20844506-20844542)
chr5 (453-489)||(23179540-23179576)
chr5 (453-489)||(23179631-23179667)
chr5 (453-489)||(32672891-32672927)
[»] chr3 (15 HSPs)
chr3 (5-459)||(18200483-18200937)
chr3 (5-459)||(26950254-26950708)
chr3 (5-459)||(36092339-36092793)
chr3 (235-321)||(12807577-12807663)
chr3 (228-315)||(14458470-14458557)
chr3 (453-489)||(854976-855012)
chr3 (453-489)||(6953291-6953327)
chr3 (453-489)||(6953430-6953466)
chr3 (453-489)||(6953812-6953848)
chr3 (453-489)||(18199352-18199388)
chr3 (453-489)||(36093873-36093909)
chr3 (453-489)||(36093964-36094000)
chr3 (453-489)||(36947725-36947761)
chr3 (453-489)||(36947864-36947900)
chr3 (453-489)||(36948003-36948039)
[»] chr2 (9 HSPs)
chr2 (5-459)||(13906996-13907450)
chr2 (5-459)||(26454641-26455095)
chr2 (5-459)||(40604478-40604932)
chr2 (453-489)||(32287325-32287361)
chr2 (453-489)||(13899908-13899944)
chr2 (453-489)||(13905806-13905842)
chr2 (453-489)||(26453534-26453570)
chr2 (453-489)||(35433139-35433175)
chr2 (453-489)||(40603369-40603405)
[»] chr1 (8 HSPs)
chr1 (5-459)||(35595486-35595940)
chr1 (5-459)||(2045785-2046239)
chr1 (194-261)||(52589715-52589782)
chr1 (453-489)||(2051974-2052010)
chr1 (453-489)||(39514207-39514243)
chr1 (453-489)||(45507254-45507290)
chr1 (453-489)||(45507403-45507439)
chr1 (453-489)||(49791612-49791648)
[»] scaffold0121 (3 HSPs)
scaffold0121 (453-489)||(41422-41458)
scaffold0121 (453-489)||(41240-41276)
scaffold0121 (453-489)||(41331-41367)
[»] scaffold0160 (1 HSPs)
scaffold0160 (453-489)||(36132-36168)


Alignment Details
Target: chr4 (Bit Score: 423; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 5 - 459
Target Start/End: Original strand, 41860409 - 41860863
Alignment:
Q  5 aacaatgatatgaatcatggtttacaacttaatttgtagtttgcatagttcatgggacatctaagacacagtcacatcagtttaatcaaccaccaccgta 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  41860409 aacaatgatatgaatcatggtttacaacttaatttgtagtttgcatagctcaggggatatctaagacacagtcacatcagtataatcaaccaccaccgta 41860508  T
Q  105 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatag 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  41860509 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatag 41860608  T
Q  205 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaac 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41860609 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaac 41860708  T
Q  305 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagag 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41860709 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagag 41860808  T
Q  405 gaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 459  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  41860809 gaattgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 41860863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 5 - 459
Target Start/End: Complemental strand, 52681921 - 52681467
Alignment:
Q  5 aacaatgatatgaatcatggtttacaacttaatttgtagtttgcatagttcatgggacatctaagacacagtcacatcagtttaatcaaccaccaccgta 104  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  52681921 aacaatgatatgaatcatagtttacaacttaatttgtagtttgcatagctcaggggatatctaagacacagtcacatcagtataatcaaccaccaccgta 52681822  T
Q  105 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatag 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  52681821 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaatctccttctagaatataacaaacaaaaaaagagatgataataaattagatag 52681722  T
Q  205 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaac 304  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||     
T  52681721 caatccaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcatactcttatttcaaccccgaatttgaaaattcctgaat 52681622  T
Q  305 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagag 404  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  52681621 tgcaaaatcaacaaactaaaccccacaccaattatataacaattactttgattttgtaagaagcctaaaaagctgttgcaagctattttgtacaatagag 52681522  T
Q  405 gaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 459  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  52681521 gaattgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 52681467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 85 - 326
Target Start/End: Original strand, 30576448 - 30576688
Alignment:
Q  85 tttaatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaac-------aaccaccaccgcataaacctccttctagaatataacaaaccg 177  Q
    |||| |||||||||||| ||||||| |||| |||  ||||||||||||||        ||||||| ||||||||||||| |||||||| |||            
T  30576448 tttattcaaccaccaccatataaatcatcagcgcaggggccttcttgcaagttacgaaaaccaccgccgcataaacctcgttctagaaaatat------- 30576540  T
Q  178 aaaaagagatgataataaattagatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattc 277  Q
     |||||||||| |||||||||||||| ||||| |||||||||| || ||| |||||||||||| ||||||| || |||||||| |||| | |||||||||    
T  30576541 -aaaagagatggtaataaattagataacaatgaaattcaaaaactcgtcgaattacaaataacaaaaaatccaattaaacaaaagctcttgctcttattc 30576639  T
Q  278 caaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaaacc 326  Q
    ||||| | | |||| ||||| ||  |||||||||| |||||||||||||    
T  30576640 caaccgccattttggaaatttctctactgcaaaatgaacaaaccaaacc 30576688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 302 - 456
Target Start/End: Complemental strand, 15057124 - 15056967
Alignment:
Q  302 aactgcaaaatcaacaaaccaaaccccacaccaatcatat----aacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtac 397  Q
    |||| ||||||||||| ||||||||  ||| |||||||||    ||||||||| ||||||||  |||||  |||| |||||||||||| |||||||| ||    
T  15057124 aactccaaaatcaacataccaaacct-acaacaatcatatgaacaacaattacgttgattttaaaagaaatctaagaagctattgcaatctattttgaac 15057026  T
Q  398 aatagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagagga 456  Q
    || | |||||||||| |  || ||||||  |||||||| ||| ||||| ||||||||||    
T  15057025 aacaaaggaattgaaagagaataaagatacgtggttaaacttggtcacgaagaagagga 15056967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 295
Target Start/End: Complemental strand, 14991423 - 14991327
Alignment:
Q  199 agatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaa 295  Q
    |||||||||||||||||| ||  |||||  | |||||||||||||| |||||| |||||||||  |   ||||||||| ||||||| |||| |||||    
T  14991423 agatagcaatgcaattcagaatctcatcataatacaaataaccaaagatcaaattaaacaaatattttcactcttattacaacccccaattagaaaa 14991327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 323
Target Start/End: Original strand, 47964110 - 47964156
Alignment:
Q  277 ccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaa 323  Q
    |||||||| ||||||||||||| | ||||| ||||||||||||||||    
T  47964110 ccaacccctaatttgaaaattcataaactgtaaaatcaacaaaccaa 47964156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Original strand, 41861939 - 41861975
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41861939 aggaggagggaaattaggaaatcatggttagggtttg 41861975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Original strand, 41862030 - 41862066
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41862030 aggaggagggaaattaggaaatcatggttagggtttg 41862066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Original strand, 41862121 - 41862157
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41862121 aggaggagggaaattaggaaatcatggttagggtttg 41862157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Original strand, 41862212 - 41862248
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41862212 aggaggagggaaattaggaaatcatggttagggtttg 41862248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Original strand, 41862403 - 41862439
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41862403 aggaggagggaaattaggaaatcatggttagggtttg 41862439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Original strand, 41946638 - 41946674
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41946638 aggaggagggaaattaggaaatcatggttagggtttg 41946674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Original strand, 41946729 - 41946765
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41946729 aggaggagggaaattaggaaatcatggttagggtttg 41946765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Complemental strand, 52680395 - 52680359
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||  ||||||||||||||||||||||||||||    
T  52680395 aggaggagggaaattaggaaatcatggttagggtttg 52680359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Complemental strand, 53285732 - 53285696
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||  ||||||||||||||||||||||||||||    
T  53285732 aggaggagtgaaattaggaaatcatggttagggtttg 53285696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 5 - 459
Target Start/End: Original strand, 14995016 - 14995470
Alignment:
Q  5 aacaatgatatgaatcatggtttacaacttaatttgtagtttgcatagttcatgggacatctaagacacagtcacatcagtttaatcaaccaccaccgta 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||| ||||||||||||||||||||||||||||||||||||||    
T  14995016 aacaatgatatgaatcatggtttacaacttaatttgtagtttgcatagctcaggggatatcaaagacacagtcacatcagtttaatcaaccaccaccgta 14995115  T
Q  105 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatag 204  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  14995116 taaattatcaccacgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatag 14995215  T
Q  205 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaac 304  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14995216 caatgcaattcaaacagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaac 14995315  T
Q  305 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagag 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14995316 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagag 14995415  T
Q  405 gaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 459  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14995416 gaattgaatggaaagaaagatgtgtggttaaccttagtcacaaaaaagaggagga 14995470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Original strand, 22732207 - 22732243
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||  ||||||||||||||||||||||||||||    
T  22732207 aggaggagtgaaattaggaaatcatggttagggtttg 22732243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 415; Significance: 0; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 5 - 459
Target Start/End: Complemental strand, 22006168 - 22005714
Alignment:
Q  5 aacaatgatatgaatcatggtttacaacttaatttgtagtttgcatagttcatgggacatctaagacacagtcacatcagtttaatcaaccaccaccgta 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  22006168 aacaatgatatgaatcatggtttacaacttaatttgtagtttgcatagctcaggggatatctaagacacagtcacatcagtataatcaaccaccaccgta 22006069  T
Q  105 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatag 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  22006068 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatag 22005969  T
Q  205 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaac 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  22005968 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttatttcaaccccgaatttgaaaattcctgaac 22005869  T
Q  305 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagag 404  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22005868 tgcaaaatcaaaaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagag 22005769  T
Q  405 gaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 459  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  22005768 gaattgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 22005714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 7 - 459
Target Start/End: Complemental strand, 7892942 - 7892490
Alignment:
Q  7 caatgatatgaatcatggtttacaacttaatttgtagtttgcatagttcatgggacatctaagacacagtcacatcagtttaatcaaccaccaccgtata 106  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  7892942 caatgatatgaatcatagtttacaacttaatttgtagtttgcatagctcaggggatatctaagacacagtcacatcagtataatcaaccaccaccgtata 7892843  T
Q  107 aattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatagca 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  7892842 aattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatagca 7892743  T
Q  207 atgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactg 306  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  7892742 atccaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcatactcttatttcaaccccgaatttgaaaattcctgaactg 7892643  T
Q  307 caaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagagga 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7892642 caaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctgttgcaagctattttgtacaatagagga 7892543  T
Q  407 attgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 459  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  7892542 attgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 7892490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 68 - 460
Target Start/End: Original strand, 3598843 - 3599241
Alignment:
Q  68 agacacagtcacatcagtttaatcaaccaccaccgtataaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttcta----- 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||         
T  3598843 agacacagtcacatcagtttaatcaaccaccaccgtataaattatcatcgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagatct 3598942  T
Q  163 -gaatataacaaaccgaaaaagagatgataataaattagatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaat 261  Q
     |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  3598943 agaatataacaaacaaaaaaagagatgataataaattagatagcaatgcaattcaaaaagtcatcgaaatacaaataaccaaaaatcaaactaaacaaat 3599042  T
Q  262 gctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgt 361  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3599043 gctcccactcttattccaaccccgaatttgaaaattcctgaactacaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgt 3599142  T
Q  362 aagaagcctaaaaagctattgcaagctattttgtacaatagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggaggat 460  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||    
T  3599143 aagaagcctaaaaagctattgcaagctattttgtacaatagaggaattgaatgtaaagaaagatgtgtggttaaccttagtcacagataagaggaggat 3599241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 3595867 - 3595936
Alignment:
Q  5 aacaatgatatgaatcatggtttacaacttaatttgtagtttgcatagttcatgggacatctaagacaca 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||    
T  3595867 aacaatgatatgaatcatggtttacaacttaatttgtagtttgcatagctcagaggacatctaagacaca 3595936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 321
Target Start/End: Original strand, 13604144 - 13604262
Alignment:
Q  202 tagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctg 301  Q
    ||||||| ||||| ||| | ||| | |||||| ||||||||||||||||| |||||||||| |  |||||||||   |||||| ||||||||||||| |     
T  13604144 tagcaatacaatttaaacactcaccagattacgaataaccaaaaatcaaattaaacaaatgttattactcttatcttaacccctaatttgaaaattcat- 13604242  T
Q  302 aactgcaaaatcaacaaacc 321  Q
    || || ||||||||||||||    
T  13604243 aaatgtaaaatcaacaaacc 13604262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Original strand, 3600149 - 3600185
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||  ||||||||||||||||||||||||||||    
T  3600149 aggaggagggaaattaggaaatcatggttagggtttg 3600185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Complemental strand, 5091003 - 5090967
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||  ||||||||||||||||||||||||||||    
T  5091003 aggaggagtgaaattaggaaatcatggttagggtttg 5090967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Complemental strand, 7891418 - 7891382
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||  ||||||||||||||||||||||||||||    
T  7891418 aggaggagggaaattaggaaatcatggttagggtttg 7891382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Complemental strand, 13927476 - 13927440
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||  ||||||||||||||||||||||||||||    
T  13927476 aggaggagggaaattaggaaatcatggttagggtttg 13927440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Complemental strand, 22004359 - 22004323
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||  ||||||||||||||||||||||||||||    
T  22004359 aggaggagggaaattaggaaatcatggttagggtttg 22004323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Complemental strand, 22004550 - 22004514
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||  ||||||||||||||||||||||||||||    
T  22004550 aggaggagggaaattaggaaatcatggttagggtttg 22004514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Complemental strand, 22004641 - 22004605
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||  ||||||||||||||||||||||||||||    
T  22004641 aggaggagggaaattaggaaatcatggttagggtttg 22004605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 5 - 459
Target Start/End: Complemental strand, 3590789 - 3590335
Alignment:
Q  5 aacaatgatatgaatcatggtttacaacttaatttgtagtttgcatagttcatgggacatctaagacacagtcacatcagtttaatcaaccaccaccgta 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3590789 aacaatgatatgaatcatggtttacaacttaatttgtagtttgcatagctcaggggacatctaagacacagtcacatcagtttaatcaaccaccaccgta 3590690  T
Q  105 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatag 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  3590689 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatag 3590590  T
Q  205 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaac 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3590589 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattgctgaac 3590490  T
Q  305 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagag 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3590489 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagtctaaaaagctattgcaagctattttgtacaatagag 3590390  T
Q  405 gaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 459  Q
    ||||||||| || ||||||||||||||||||||||||||||| | ||||||||||    
T  3590389 gaattgaatagagagaaagatgtgtggttaaccttagtcacataaaagaggagga 3590335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 415; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 5 - 459
Target Start/End: Complemental strand, 32674460 - 32674006
Alignment:
Q  5 aacaatgatatgaatcatggtttacaacttaatttgtagtttgcatagttcatgggacatctaagacacagtcacatcagtttaatcaaccaccaccgta 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  32674460 aacaatgatatgaatcatggtttacaacttaatttgtagtttgcatagctcaggggatatctaagacacagtcacatcagtataatcaaccaccaccgta 32674361  T
Q  105 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatag 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  32674360 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatag 32674261  T
Q  205 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaac 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  32674260 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaat 32674161  T
Q  305 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagag 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  32674160 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagttattttgtacaatagag 32674061  T
Q  405 gaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 459  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  32674060 gaattgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 32674006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 263 - 459
Target Start/End: Original strand, 22636691 - 22636891
Alignment:
Q  263 ctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaaaccccacaccaatcatat----aacaattactttgattt 358  Q
    ||||||||||| |||||||| | |||||||||| || | ||||||||||||||||||| ||||||||||||||||||||    |||||||||||||||||    
T  22636691 ctcctactctttttccaaccaccaatttgaaaactcataaactgcaaaatcaacaaacaaaaccccacaccaatcatatgaacaacaattactttgattt 22636790  T
Q  359 tgtaagaagcctaaaaagctattgcaagctattttgtacaatagaggaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagg 458  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||| || ||||||||||||||||  |||||||||||    
T  22636791 tgtaagaagcctaaaaagctattgcaagctattttgaacaaaagaggaattgaacggaaagaaagatatgcggttaaccttagtcacggagaagaggagg 22636890  T
Q  459 a 459  Q
    |    
T  22636891 a 22636891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 228 - 321
Target Start/End: Complemental strand, 21122422 - 21122329
Alignment:
Q  228 gattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaacc 321  Q
    |||||| ||||||||||||| ||| ||||||||||||  |||||||||   |||||| ||||| ||||||| |  || | ||||||||||||||    
T  21122422 gattacgaataaccaaaaataaaattaaacaaatgctattactcttatcttaacccctaatttaaaaattcatagaccgtaaaatcaacaaacc 21122329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Complemental strand, 20844542 - 20844506
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||  ||||||||||||||||||||||||||||    
T  20844542 aggaggagggaaattaggaaatcatggttagggtttg 20844506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Complemental strand, 23179576 - 23179540
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||  ||||||||||||||||||||||||||||    
T  23179576 aggaggagggaaattaggaaatcatggttagggtttg 23179540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Complemental strand, 23179667 - 23179631
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||  ||||||||||||||||||||||||||||    
T  23179667 aggaggagggaaattaggaaatcatggttagggtttg 23179631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Complemental strand, 32672927 - 32672891
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||  ||||||||||||||||||||||||||||    
T  32672927 aggaggagggaaattaggaaatcatggttagggtttg 32672891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 415; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 5 - 459
Target Start/End: Complemental strand, 18200937 - 18200483
Alignment:
Q  5 aacaatgatatgaatcatggtttacaacttaatttgtagtttgcatagttcatgggacatctaagacacagtcacatcagtttaatcaaccaccaccgta 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  18200937 aacaatgatatgaatcatggtttacaacttaatttgtagtttgcatagctcaggggacatctaagacacagtcacatcagtttaatcaaccaccaccgta 18200838  T
Q  105 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatag 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  18200837 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatag 18200738  T
Q  205 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaac 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  18200737 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctattcttattccaaccccaaatttgaaaattcctgaac 18200638  T
Q  305 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagag 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18200637 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagtctaaaaagctattgcaagctattttgtacaatagag 18200538  T
Q  405 gaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 459  Q
    |||||||||||| ||||||||||||||||||||||||||||| | ||||||||||    
T  18200537 gaattgaatggagagaaagatgtgtggttaaccttagtcacataaaagaggagga 18200483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 5 - 459
Target Start/End: Complemental strand, 26950708 - 26950254
Alignment:
Q  5 aacaatgatatgaatcatggtttacaacttaatttgtagtttgcatagttcatgggacatctaagacacagtcacatcagtttaatcaaccaccaccgta 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||| |||||||||||| ||||||||||||||||||    
T  26950708 aacaatgatatgaatcatggtttacaacttaatttgtagtttgcatagctcaggggatatctaagacatagtcacatcagtataatcaaccaccaccgta 26950609  T
Q  105 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatag 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||     
T  26950608 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagataa 26950509  T
Q  205 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaac 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26950508 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaac 26950409  T
Q  305 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagag 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26950408 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagag 26950309  T
Q  405 gaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 459  Q
    |||||||||| ||||||||||||||||||||||||||||||| | ||||||||||    
T  26950308 gaattgaatgcaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 26950254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 5 - 459
Target Start/End: Original strand, 36092339 - 36092793
Alignment:
Q  5 aacaatgatatgaatcatggtttacaacttaatttgtagtttgcatagttcatgggacatctaagacacagtcacatcagtttaatcaaccaccaccgta 104  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||| |||||||||||| |||||| ||| |||||||||||||| |||    
T  36092339 aacaatgatatgaatcatggtttacagcttaatttgtagtttgcatagctcaggggatatctaagacacaatcacattagtataatcaaccaccactgta 36092438  T
Q  105 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatag 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  36092439 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatag 36092538  T
Q  205 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaac 304  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  36092539 caatgcaattcaaaaagtcatcagattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcatgaac 36092638  T
Q  305 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagag 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36092639 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagag 36092738  T
Q  405 gaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 459  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  36092739 gaattgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 36092793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 235 - 321
Target Start/End: Original strand, 12807577 - 12807663
Alignment:
Q  235 aataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaacc 321  Q
    ||||||||||||||||| |||||||||| |  |||||||||   |||||| ||||||||||||| | ||||| ||||||||||||||    
T  12807577 aataaccaaaaatcaaattaaacaaatgttattactcttatcttaacccctaatttgaaaattcataaactgtaaaatcaacaaacc 12807663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 315
Target Start/End: Original strand, 14458470 - 14458557
Alignment:
Q  228 gattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaa 315  Q
    |||||| ||| ||||||||| ||| ||||||||||||  |||||||||   ||| || ||||||||||||| | ||||| ||||||||    
T  14458470 gattacgaattaccaaaaataaaattaaacaaatgctattactcttatcttaactcctaatttgaaaattcataaactgtaaaatcaa 14458557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Complemental strand, 855012 - 854976
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||  ||||||||||||||||||||||||||||    
T  855012 aggaggagggaaattaggaaatcatggttagggtttg 854976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Original strand, 6953291 - 6953327
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||  ||||||||||||||||||||||||||||    
T  6953291 aggaggagggaaattaggaaatcatggttagggtttg 6953327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Original strand, 6953430 - 6953466
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||  ||||||||||||||||||||||||||||    
T  6953430 aggaggagggaaattaggaaatcatggttagggtttg 6953466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Original strand, 6953812 - 6953848
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||  ||||||||||||||||||||||||||||    
T  6953812 aggaggagggaaattaggaaatcatggttagggtttg 6953848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Complemental strand, 18199388 - 18199352
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||  ||||||||||||||||||||||||||||    
T  18199388 aggaggagggaaattaggaaatcatggttagggtttg 18199352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Original strand, 36093873 - 36093909
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36093873 aggaggagggaaattaggaaatcatggttagggtttg 36093909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Original strand, 36093964 - 36094000
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36093964 aggaggagggaaattaggaaatcatggttagggtttg 36094000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Original strand, 36947725 - 36947761
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36947725 aggaggagggaaattaggaaatcatggttagggtttg 36947761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Original strand, 36947864 - 36947900
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36947864 aggaggagggaaattaggaaatcatggttagggtttg 36947900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Original strand, 36948003 - 36948039
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36948003 aggaggagggaaattaggaaatcatggttagggtttg 36948039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 411; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 5 - 459
Target Start/End: Complemental strand, 13907450 - 13906996
Alignment:
Q  5 aacaatgatatgaatcatggtttacaacttaatttgtagtttgcatagttcatgggacatctaagacacagtcacatcagtttaatcaaccaccaccgta 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||| |||||||||| ||||||||||||||||||    
T  13907450 aacaatgatatgaatcatggtttacaacttaatttgtagtttgcatagctcaggggatatctaagacacattcacatcagtataatcaaccaccaccgta 13907351  T
Q  105 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatag 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  13907350 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatag 13907251  T
Q  205 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaac 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  13907250 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttatttcaaccccgaatttgaaaattcctgaac 13907151  T
Q  305 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagag 404  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13907150 tgcaaaatcaaaaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagag 13907051  T
Q  405 gaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 459  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  13907050 gaattgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 13906996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 5 - 459
Target Start/End: Complemental strand, 26455095 - 26454641
Alignment:
Q  5 aacaatgatatgaatcatggtttacaacttaatttgtagtttgcatagttcatgggacatctaagacacagtcacatcagtttaatcaaccaccaccgta 104  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||| ||| |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  26455095 aacaatgatatgaatcatagtttacaacttaatttttagtttgcatagctcaggggatatctaagacacagtcacatcagtataatcaaccaccaccgta 26454996  T
Q  105 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatag 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  26454995 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatag 26454896  T
Q  205 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaac 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  26454895 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcatactcttatttcaaccccgaatttgaaaattcctgaac 26454796  T
Q  305 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagag 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26454795 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctgttgcaagctattttgtacaatagag 26454696  T
Q  405 gaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 459  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  26454695 gaattgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 26454641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 5 - 459
Target Start/End: Complemental strand, 40604932 - 40604478
Alignment:
Q  5 aacaatgatatgaatcatggtttacaacttaatttgtagtttgcatagttcatgggacatctaagacacagtcacatcagtttaatcaaccaccaccgta 104  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  40604932 aacaatgatatgaatcatagtttacaacttaatttgtagtttgcatagctcaggggatatctaagacacagtcacatcagtataatcaaccaccaccgta 40604833  T
Q  105 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatag 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  40604832 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatag 40604733  T
Q  205 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaac 304  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||    
T  40604732 caatccaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcatactcttatttcaaccccgaatttgaaaatttctgaac 40604633  T
Q  305 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagag 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  40604632 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagttgttgcaagctattttgtacaatagag 40604533  T
Q  405 gaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 459  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  40604532 gaattgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 40604478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 453 - 489
Target Start/End: Complemental strand, 32287361 - 32287325
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||| ||||||||||||||||||||||||||||    
T  32287361 aggaggatggaaattaggaaatcatggttagggtttg 32287325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Complemental strand, 13899944 - 13899908
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||  ||||||||||||||||||||||||||||    
T  13899944 aggaggagggaaattaggaaatcatggttagggtttg 13899908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Complemental strand, 13905842 - 13905806
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||  ||||||||||||||||||||||||||||    
T  13905842 aggaggagggaaattaggaaatcatggttagggtttg 13905806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Complemental strand, 26453570 - 26453534
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||  ||||||||||||||||||||||||||||    
T  26453570 aggaggagggaaattaggaaatcatggttagggtttg 26453534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Original strand, 35433139 - 35433175
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||  ||||||||||||||||||||||||||||    
T  35433139 aggaggagggaaattaggaaatcatggttagggtttg 35433175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Complemental strand, 40603405 - 40603369
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||  ||||||||||||||||||||||||||||    
T  40603405 aggaggagggaaattaggaaatcatggttagggtttg 40603369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 407; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 5 - 459
Target Start/End: Original strand, 35595486 - 35595940
Alignment:
Q  5 aacaatgatatgaatcatggtttacaacttaatttgtagtttgcatagttcatgggacatctaagacacagtcacatcagtttaatcaaccaccaccgta 104  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35595486 aacaatgatataaatcatggtttacaacttaatttgtagtttgcatagctcaggggacatctaagacacagtcacatcagtttaatcaaccaccaccgta 35595585  T
Q  105 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatag 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||    
T  35595586 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaggagatgataataaattagatag 35595685  T
Q  205 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaac 304  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35595686 caatgcaattcaaaaagtcaacggattacaaataaccaaaaatcaaactaaacaaatgctcccactcttattccaaccccgaatttgaaaattcctgaac 35595785  T
Q  305 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagag 404  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35595786 tgcaaaatcaacaaaccaaatcccacaccaatcatataacaattattttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagag 35595885  T
Q  405 gaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 459  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  35595886 gaattgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 35595940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 5 - 459
Target Start/End: Original strand, 2045785 - 2046239
Alignment:
Q  5 aacaatgatatgaatcatggtttacaacttaatttgtagtttgcatagttcatgggacatctaagacacagtcacatcagtttaatcaaccaccaccgta 104  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  2045785 aacaatgatatgaatcatagtttacaacttaatttgtagtttgcatagctcaggggatatctaagacacagtcacatcagtataatcaaccaccaccgta 2045884  T
Q  105 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaaccgaaaaagagatgataataaattagatag 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  2045885 taaattatcaccgcgagggccttcttgcaacaaccaccaccgcataaacctccttctagaatataacaaacaaaaaaagagatgataataaattagatag 2045984  T
Q  205 caatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaac 304  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||    
T  2045985 caatccaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaataaatgctcatactcttatttcaaccccgaatttgaaaattcctgaac 2046084  T
Q  305 tgcaaaatcaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctattgcaagctattttgtacaatagag 404  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2046085 tgcaaaataaacaaaccaaaccccacaccaatcatataacaattactttgattttgtaagaagcctaaaaagctgttgcaagctattttgtacaatagag 2046184  T
Q  405 gaattgaatggaaagaaagatgtgtggttaaccttagtcacaaagaagaggagga 459  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  2046185 gaattgaatggaaagaaagatgtgtggttaaccttagtcacagaaaagaggagga 2046239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 194 - 261
Target Start/End: Complemental strand, 52589782 - 52589715
Alignment:
Q  194 aaattagatagcaatgcaattcaaaaagtcatcggattacaaataaccaaaaatcaaactaaacaaat 261  Q
    ||||||||||||||||||||||||||| || |   |||||||||||| ||||||||||  ||||||||    
T  52589782 aaattagatagcaatgcaattcaaaaactcgttacattacaaataacaaaaaatcaaatcaaacaaat 52589715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Original strand, 2051974 - 2052010
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||  ||||||||||||||||||||||||||||    
T  2051974 aggaggagggaaattaggaaatcatggttagggtttg 2052010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Original strand, 39514207 - 39514243
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||  ||||||||||||||||||||||||||||    
T  39514207 aggaggagggaaattaggaaatcatggttagggtttg 39514243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Original strand, 45507254 - 45507290
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||  ||||||||||||||||||||||||||||    
T  45507254 aggaggagggaaattaggaaatcatggttagggtttg 45507290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Original strand, 45507403 - 45507439
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||  ||||||||||||||||||||||||||||    
T  45507403 aggaggagggaaattaggaaatcatggttagggtttg 45507439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Original strand, 49791612 - 49791648
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||  ||||||||||||||||||||||||||||    
T  49791612 aggaggagggaaattaggaaatcatggttagggtttg 49791648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 453 - 489
Target Start/End: Complemental strand, 41458 - 41422
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||| ||||||||||||||||||||||||||||    
T  41458 aggaggatggaaattaggaaatcatggttagggtttg 41422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Complemental strand, 41276 - 41240
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41276 aggaggagggaaattaggaaatcatggttagggtttg 41240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Complemental strand, 41367 - 41331
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||  ||||||||||||||||||||||||||||    
T  41367 aggaggagggaaattaggaaatcatggttagggtttg 41331  T

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Target: scaffold0160 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Complemental strand, 36168 - 36132
Alignment:
Q  453 aggaggatagaaattaggaaatcatggttagggtttg 489  Q
    |||||||  ||||||||||||||||||||||||||||    
T  36168 aggaggagggaaattaggaaatcatggttagggtttg 36132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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