View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11697_high_10 (Length: 302)

Name: NF11697_high_10
Description: NF11697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11697_high_10
NF11697_high_10
[»] chr2 (8 HSPs)
chr2 (31-302)||(11119116-11119387)
chr2 (31-301)||(11111345-11111615)
chr2 (31-302)||(10793178-10793449)
chr2 (31-276)||(11156597-11156842)
chr2 (31-275)||(11137655-11137899)
chr2 (31-160)||(11145960-11146089)
chr2 (31-275)||(11149929-11150173)
chr2 (83-141)||(11183613-11183671)


Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 31 - 302
Target Start/End: Original strand, 11119116 - 11119387
Alignment:
Q  31 ccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg 130  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11119116 ccaacaactcccgataaattcgacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg 11119215  T
Q  131 cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgct 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11119216 cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgct 11119315  T
Q  231 tactggaaagaaaggagaaattagaaagcagtgcaattttgttaacaagaaatcttctgaattggatcttgc 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11119316 tactggaaagaaaggagaaattagaaagcagtgcaattttgttaacaagaaatcttctgaattggatcttgc 11119387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 31 - 301
Target Start/End: Original strand, 11111345 - 11111615
Alignment:
Q  31 ccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg 130  Q
    ||||| |||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11111345 ccaacgactcctgatacattggacaagaacttctacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattattctcaacaccgggtg 11111444  T
Q  131 cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgct 230  Q
    |||||||||||||||||||||||| ||||| ||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||    
T  11111445 cagataccattagcattgtcaacagctttgcaaatagccaaaatgttttctttcagaactttataaattcaatgattaaaatgggtaatattgatgtgct 11111544  T
Q  231 tactggaaagaaaggagaaattagaaagcagtgcaattttgttaacaagaaatcttctgaattggatcttg 301  Q
    ||| ||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||    
T  11111545 taccggaaagaaaggagaaattagaaaacaatgcaattttattaacaagaaatcttctgaattggatcttg 11111615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 31 - 302
Target Start/End: Complemental strand, 10793449 - 10793178
Alignment:
Q  31 ccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg 130  Q
    ||||| |||||||||| ||| |||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||   ||    
T  10793449 ccaactactcctgatacattggacaagaacttctacaacaatcttcaggttaaaaagggtttgcttcaaagtgaccaagaattgttttcaacaccaaatg 10793350  T
Q  131 cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgct 230  Q
    ||||||||| ||||||||| || |||||||  || ||||||| || ||||||  ||| |||||  ||  ||||||||||||||||||||||||| |||||    
T  10793349 cagataccactagcattgttaataactttgccaataaccaaagtgctttctttgagagctttaagaaagcaatgattaaaatgggtaatattggtgtgct 10793250  T
Q  231 tactggaaagaaaggagaaattagaaagcagtgcaattttgttaacaagaaatcttctgaattggatcttgc 302  Q
    ||| ||||||||||||||||| || || || ||||||||||||||||| ||||||||||| || ||||||||    
T  10793249 taccggaaagaaaggagaaataaggaaacaatgcaattttgttaacaaaaaatcttctgagttagatcttgc 10793178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 31 - 276
Target Start/End: Original strand, 11156597 - 11156842
Alignment:
Q  31 ccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg 130  Q
    ||||| |||||||||||||| ||||||||||| |||  |||||||||||  |||||||| ||||| |||||||| ||||| |||||||||||| | ||||    
T  11156597 ccaacgactcctgataaatttgacaagaactattactccaatcttcaagtgaaaaagggcttgctccaaagtgatcaagagttgttctcaacatccggtg 11156696  T
Q  131 cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgct 230  Q
    ||||||||||||||||||||||||| ||  | | | | ||||| | ||||||  ||| |||||    | |||||||||||||||| |||||||| |||||    
T  11156697 cagataccattagcattgtcaacaaattcagcaccgatcaaaacgctttctttgagagctttaaggctgcaatgattaaaatgggcaatattggtgtgct 11156796  T
Q  231 tactggaaagaaaggagaaattagaaagcagtgcaattttgttaac 276  Q
     || || | ||||||||| |||||||| || ||||| |||||||||    
T  11156797 aacagggacgaaaggagagattagaaaacaatgcaactttgttaac 11156842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 31 - 275
Target Start/End: Original strand, 11137655 - 11137899
Alignment:
Q  31 ccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg 130  Q
    ||||| |||||||||||||| |||||||||||||||  ||||||||| |||||||||||||||||||| |||||||||||  | ||||| ||| | ||||    
T  11137655 ccaacgactcctgataaatttgacaagaactactactccaatcttcagggtaaaaagggtttgcttcagagtgaccaagagcttttctcgacatctggtg 11137754  T
Q  131 cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgct 230  Q
    | ||||||||||||||||||||||| ||  |     || |||||| ||||||  | | ||||  |    | ||||||||||||||||||||||| |||||    
T  11137755 ctgataccattagcattgtcaacaagttcagtgctgacaaaaatgctttctttgatagctttgaagccgccatgattaaaatgggtaatattggtgtgct 11137854  T
Q  231 tactggaaagaaaggagaaattagaaagcagtgcaattttgttaa 275  Q
     || || || |||||||| |||||||| || ||||||||||||||    
T  11137855 gaccgggaaaaaaggagagattagaaaacattgcaattttgttaa 11137899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 31 - 160
Target Start/End: Original strand, 11145960 - 11146089
Alignment:
Q  31 ccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg 130  Q
    ||||| |||||||||||||| ||||||||||| |||   ||||||||||  ||||| ||||||||||||||||| ||||| |||||||||||| | ||||    
T  11145960 ccaactactcctgataaatttgacaagaactattactctaatcttcaagtgaaaaaaggtttgcttcaaagtgatcaagagttgttctcaacatctggtg 11146059  T
Q  131 cagataccattagcattgtcaacaactttg 160  Q
    | ||||||||||||||||||||||||||||    
T  11146060 ctgataccattagcattgtcaacaactttg 11146089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 31 - 275
Target Start/End: Original strand, 11149929 - 11150173
Alignment:
Q  31 ccaacaactcctgataaattagacaagaactactacaacaatcttcaaggtaaaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtg 130  Q
    ||||| |||||||||||||| ||||||||||| |||   ||||||||||  |||||||||||||| |||||||| ||||| |||||||||||| | |||     
T  11149929 ccaacgactcctgataaatttgacaagaactattactctaatcttcaagtgaaaaagggtttgctccaaagtgatcaagagttgttctcaacatctggtt 11150028  T
Q  131 cagataccattagcattgtcaacaactttggaaacaaccaaaatgttttcttccagaactttataaattcaatgattaaaatgggtaatattggcgtgct 230  Q
    ||||||||||||||||||||||||| |||| || | | ||||| | ||| ||  ||| |||||    | | ||||| |||||||| |||||||| ||| |    
T  11150029 cagataccattagcattgtcaacaaatttgcaaccgatcaaaaagctttttttgagagctttaaggctgctatgatcaaaatgggaaatattggtgtgtt 11150128  T
Q  231 tactggaaagaaaggagaaattagaaagcagtgcaattttgttaa 275  Q
     ||||| ||  ||||||| |||||||| || ||||| ||||||||    
T  11150129 aactgggaaacaaggagagattagaaaacaatgcaactttgttaa 11150173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 141
Target Start/End: Complemental strand, 11183671 - 11183613
Alignment:
Q  83 aaaagggtttgcttcaaagtgaccaagaattgttctcaacaccgggtgcagataccatt 141  Q
    ||||||| ||| |||| ||||||||||||||||| || ||||| ||||| |||||||||    
T  11183671 aaaaggggttgtttcagagtgaccaagaattgttttccacacctggtgctgataccatt 11183613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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