View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11697_high_2 (Length: 471)
Name: NF11697_high_2
Description: NF11697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11697_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 30 - 359
Target Start/End: Original strand, 5351915 - 5352243
Alignment:
| Q |
30 |
tcagcctccagcaaaatttaacggtgatggcgatttgattgatcaagatgccaagaataatttggagggagttcttttgtccttgaaggcatttaccctt |
129 |
Q |
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| T |
5351915 |
tcagcctccagcaaaatttaacggtgatggcgatttgattgatcaagatgccaagaataatttggagggagttcttttgtccttgaaggcatttaccctt |
5352014 |
T |
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| Q |
130 |
caacttcaaggcaaaaattgaaacaactttaagttccataaattgcttcaatcgtgatttttattcaattaataaaacgtatttgttctttatttacatt |
229 |
Q |
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| T |
5352015 |
caacttcaaggcaaaaattgaaacaactttaagttccataaattgcttcaatcgtgatttttattcaattaaaaaaatgta-ttgttctttatttgcatt |
5352113 |
T |
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| Q |
230 |
tagaattttatttgcattgttgccttgtcctgtgttttatttgcaatgttatgttgaagtttgttaaaattccatgtattattatgaaataatagtcttg |
329 |
Q |
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| T |
5352114 |
tagaattttatttgcattgttgccttgtcctgtgtttgatttacaatgttatgttgaagtttgttaaaattccatgtattattatgaaataatagtcttg |
5352213 |
T |
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| Q |
330 |
tcacattattcattctggtattacacaggt |
359 |
Q |
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| T |
5352214 |
tcacattattcattctggtattacataggt |
5352243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 30 - 157
Target Start/End: Original strand, 5344897 - 5345024
Alignment:
| Q |
30 |
tcagcctccagcaaaatttaacggtgatggcgatttgattgatcaagatgccaagaataatttggagggagttcttttgtccttgaaggcatttaccctt |
129 |
Q |
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| T |
5344897 |
tcagcctccagcaaaatttaatagtgatggtgatttgattgatgaagatgctaagaataggttgttggcaattctgttgtccttgaaggcatttactctg |
5344996 |
T |
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| Q |
130 |
caacttcaaggcaaaaattgaaacaact |
157 |
Q |
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| T |
5344997 |
caacttcaaggcaaaaattgaaacaact |
5345024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 5325119 - 5325075
Alignment:
| Q |
107 |
tgtccttgaaggcatttacccttcaacttcaaggcaaaaattgaa |
151 |
Q |
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| T |
5325119 |
tgtccttgaaggaatttacccttaaacttcaaggcagaaattgaa |
5325075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 340
Target Start/End: Original strand, 5345382 - 5345433
Alignment:
| Q |
286 |
aagtttgttaaaattccatgtattattatgaaataatagtcttgtcacattattc |
340 |
Q |
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| T |
5345382 |
aagtttgttaaaattccatgca--att-tgaaataatagtcttgtcacattattc |
5345433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 157
Target Start/End: Complemental strand, 5338147 - 5338089
Alignment:
| Q |
99 |
agttcttttgtccttgaaggcatttacccttcaacttcaaggcaaaaattgaaacaact |
157 |
Q |
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| T |
5338147 |
agttcttgtgtccttaaaggaatttacccttcagcttcaaggttaaatttgaaacaact |
5338089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 377 - 442
Target Start/End: Complemental strand, 3855697 - 3855632
Alignment:
| Q |
377 |
caagacgcctataatctttatatatcaatggcgaagtcctttatctttgacagacagcctcctatc |
442 |
Q |
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| T |
3855697 |
caagacgcctataatctttatatatcaatggcgaagtcctttatctttgacagacagcctcctatc |
3855632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 14535375 - 14535283
Alignment:
| Q |
54 |
tgatggcgatttgattgatcaagatgccaagaataatttggagggagttcttttgtccttgaaggcatttacccttcaacttcaaggcaaaaa |
146 |
Q |
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| T |
14535375 |
tgatggcgatttgattgatgaagaggctaagaataagttgaaacaagttcttttatctttgcaggcatttactctaaggcttcaaggcaaaaa |
14535283 |
T |
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