View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11697_high_5 (Length: 372)
Name: NF11697_high_5
Description: NF11697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11697_high_5 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 25 - 372
Target Start/End: Complemental strand, 4303466 - 4303115
Alignment:
| Q |
25 |
catcaagctaaatggatgtaatttccggttttgttggaataaagccatagtggttgtatataagttgatcagcataatagaccacatccgtagtcatttt |
124 |
Q |
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| T |
4303466 |
catcaagctaaatggatgtaatttccggttttgttggaataaagccatagtggttgtatataagttgatcagcataatagaccacatccgtagtcatttt |
4303367 |
T |
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| Q |
125 |
tcgtttcgcaccaacaatcattaatcttgtttaaatccaaaaacacaaccaaattgtgacaaatgctttacaaattgaaccgaattagctcagttgtcgg |
224 |
Q |
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| T |
4303366 |
tcgtttcgcaccaacaatcattaatcttgtttaaatccaaaaacacaaccaaattgtgacaaatggtttacaaattgaaccgaattagctcagttgtcgg |
4303267 |
T |
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| Q |
225 |
tcacaattaggttttttgaacagcaactcagtttatgattttttgaacaatcctatcggcgatataaagctttgtgttgatggaaaaattgatatggagg |
324 |
Q |
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| T |
4303266 |
tcacaattaggttttttgcacaacaactcagtttatgattttttgaacaatcctatcggcgatataaagctttgtgttgatggaaaaattgatatggagg |
4303167 |
T |
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| Q |
325 |
at----gatcatattgaagaaattttctaataacaaaaatagacgcatatat |
372 |
Q |
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| T |
4303166 |
atgatcgatcatattgaggaaattttctaataacaaaaatagacgcatatat |
4303115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 226 - 323
Target Start/End: Complemental strand, 4296602 - 4296504
Alignment:
| Q |
226 |
cacaattaggttttttgaacag-caactcagtttatgattttttgaacaatcctatcggcgatataaagctttgtgttgatggaaaaattgatatggag |
323 |
Q |
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| T |
4296602 |
cacaattaggttttatgaacgtacgactcagtttatgattttttgaacaatcctagcagcgatataaagctttgtgttgatggaagaattgatatggag |
4296504 |
T |
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