View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11697_high_6 (Length: 364)
Name: NF11697_high_6
Description: NF11697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11697_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 37138169 - 37138506
Alignment:
| Q |
1 |
gaacaacatgcctggcatatgttaatttgagctcaaagacnnnnnnnnngttttgttttgtaatgattacaaaacgaatattcctagtgaagtagatggt |
100 |
Q |
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| T |
37138169 |
gaacaacatgccaggcatatgttaatttgagctcaaag------------ttgtgttttgtaatgattacaaaacgaatattcgtagtgaagtagatggt |
37138256 |
T |
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| Q |
101 |
agaaccatatgatgtaatagttagaatatttaatggtagagattagtaatgctcatatgggttggataatataatgacattaaatttttatccgtagtca |
200 |
Q |
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| T |
37138257 |
agaaccatatgatgtaatagttagaatatttaatggtagagattagtaatgctcatatgggttggataatataatgacattaaatttttatccgtagtca |
37138356 |
T |
|
| Q |
201 |
atttatgttatttagaatatgttagagattggtgtgaaagtttggatttttggatacaagtgtgctttatttttagtttcatgtgttcttatgtttcgaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37138357 |
atttatgttatttagaatatgttagagattggtgtgaaagtttggatttttggatacaagtgtgctttatttttagtctcatgtgttcttatgtttcgaa |
37138456 |
T |
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| Q |
301 |
acatattaaatcaagtttgctgatttctacttgtttagcatcttataatg |
350 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
37138457 |
acatattaaatcaagtttgcttatttctacttgtttagcatcgtataatg |
37138506 |
T |
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