View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11698_high_13 (Length: 279)
Name: NF11698_high_13
Description: NF11698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11698_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 2460506 - 2460240
Alignment:
| Q |
1 |
tcaaccaagttgtgatctttgtgaaaagtgtcagcagagcagctgagctggacaagttgcttgtggaatgcaactttccatccatatgcattcattctgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2460506 |
tcaaccaagttgtgatctttgtgaaaagtgtcagcagagcagctgagctggacaagttgcttgtggaatgcaactttccatccatatgcattcattctgg |
2460407 |
T |
|
| Q |
101 |
agtgtcccaggaagaaaggtttgtattatgtggcatcttatcttcatcaacacttaattggtgatttaatataatccataattttccttttggttttaac |
200 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2460406 |
aatgtcccaggaagaaaggtttgtattatgtggcatcttatcttcatcaacacttaattggtgatttaatataatccataattttccttttggttttaac |
2460307 |
T |
|
| Q |
201 |
tgaattatattagagaactatcatgagtattatattaacagtatttgctatagttgtattctctgct |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2460306 |
tgaattatattagagaactatcatgagtattatattaacagtatttgctatagttgtattttctgct |
2460240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 2454772 - 2454891
Alignment:
| Q |
1 |
tcaaccaagttgtgatctttgtgaaaagtgtcagcagagcagctgagctggacaagttgcttgtggaatgcaactttccatccatatgcattcattctgg |
100 |
Q |
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||||||||||||| || ||||| |||||||| ||||||||||| || || ||||||||||||| || || ||||| ||||| |||||||| |||||||| |
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| T |
2454772 |
tcaaccaagttgttatttttgtcaaaagtgttagcagagcagcagaattgaacaagttgcttgttgagtgtaacttcccatcaatatgcatacattctgg |
2454871 |
T |
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| Q |
101 |
agtgtcccaggaagaaaggt |
120 |
Q |
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| |||| ||||||||||||| |
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| T |
2454872 |
aatgtcacaggaagaaaggt |
2454891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 49559033 - 49559163
Alignment:
| Q |
1 |
tcaaccaagttgtgatctttgtgaaaagtgtcagcagagcagctgagctggacaagttgcttgtggaatgcaactttccatccatatgcattcattctgg |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||| || ||||| ||||||||||||| | ||| | || ||||| ||||| || ||||||||||| ||||| |
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| T |
49559033 |
tcaaccaagttgttatctttgtgaaaagtgttagtagagccgctgagctggacagactacttatagagtgcaattttccttctatatgcattcactctgg |
49559132 |
T |
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| Q |
101 |
agtgtcccaggaagaaaggtttgtattatgt |
131 |
Q |
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||||||| |||||||||||||| |||||| |
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| T |
49559133 |
catgtcccaagaagaaaggtttgttttatgt |
49559163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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