View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11698_high_14 (Length: 245)
Name: NF11698_high_14
Description: NF11698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11698_high_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 31180445 - 31180232
Alignment:
| Q |
19 |
caacaattatccaaaagcatactagaactcattttagtcggaaaacatatactacactgcggaagtcctctatctttgtgcagtctatttgcagaggttc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31180445 |
caacaattatccaaaagcatactagaactcattttagtcggaaaacatatactacactgcggaagtcctctatctttgtgcagtctatttgcagaggttc |
31180346 |
T |
|
| Q |
119 |
gatatttgtattttacaactgtcgttatggtgttcgtaatgaaatggttgtcttgaggatttttatagttttgtcctccctgacatttct-ttttcttgg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31180345 |
gatatttgtattttacaactgtcgttatggtgttcgtaatgaaatggttgtcttgaggatttttatagttttgtcctccctgacatttcttttttcttgg |
31180246 |
T |
|
| Q |
218 |
aatagcttcttcat |
231 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
31180245 |
aatagcttcttcat |
31180232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 31002971 - 31002776
Alignment:
| Q |
19 |
caacaattatccaaaagcatactagaactcattttagtcggaaaacatatactacactgcggaagtcctctatctttgtgcagtctatttgcagaggttc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| | ||| ||||||||||||||||||||| |
|
|
| T |
31002971 |
caacaattatccaaaagcatactagaactcattttagtcagaaaagatatactacactgcggaagtcctctttgtttttgcagtctatttgcagaggtta |
31002872 |
T |
|
| Q |
119 |
gatatttgtattttacaactgtcgttatggtgttcgtaatgaaatggtt--gtcttgaggatttttatagttttgtcctccctgacatttcttttt |
212 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31002871 |
gatatttgtattttacaactgtccttatggtgttcgtattgaaatggttaaatcatgaggatttttatagttttgtcctccctgacatttcttttt |
31002776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University