View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11698_high_2 (Length: 409)
Name: NF11698_high_2
Description: NF11698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11698_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 179 - 386
Target Start/End: Original strand, 8645344 - 8645548
Alignment:
| Q |
179 |
acggtgacttttcaatctaatagtaactatttgtaaaacatcctcacacgtaagtgtatagtttttaaatgcaattaattttgtcttacattaattacat |
278 |
Q |
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| T |
8645344 |
acggtgacttttcaatccaata---actatttgtaaaacatcctcacacgtaagtgtatagtttttaaatgcaattaattttgtcttacattaattacat |
8645440 |
T |
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| Q |
279 |
atttgtannnnnnnnatataaatttgttcgacatggactttgaaatcattcctctatcctaatgctaaatatttcttctgtttttg-agaaaacttttat |
377 |
Q |
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| T |
8645441 |
atttgtatttttttt-tataaatttgttcgacatggactttgaaatcattcctctatcctaatgctaaatatttcttctttttttgaagaaaacttttat |
8645539 |
T |
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| Q |
378 |
ataattcaa |
386 |
Q |
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| T |
8645540 |
ataattcaa |
8645548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 50 - 113
Target Start/End: Original strand, 8645101 - 8645164
Alignment:
| Q |
50 |
ctttattatattattgaacacaaataatattttatctcaagaggaagaattatattatgaaata |
113 |
Q |
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| T |
8645101 |
ctttattatattattgaacacaaataatattttatctcaagaggaagaattatattatgaaata |
8645164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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