View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11698_high_5 (Length: 374)
Name: NF11698_high_5
Description: NF11698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11698_high_5 |
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| [»] chr2 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 14458267 - 14458640
Alignment:
| Q |
1 |
ttgattagtagagggtatgcagcaacttcatcgaggagttctttgatagaatcaaaataatcaacacccttcacgagtttcctcgaatattcttcaattc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14458267 |
ttgattagtagagggtatgcagcaacttcatcgaggagttctttgatagaatcaaaataatcaacacccttcacgagtttcctcgaatattcttcaattc |
14458366 |
T |
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| Q |
101 |
cagggacaatgaaaattatagcactcttattagaaagaagactactaggttgctctgaatgccaaccgtttgctagtaaacgaggccaaacagactccca |
200 |
Q |
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| T |
14458367 |
cagggacaatgaaaattatagcactcttattagaaagaagactactaggttgctctgaatgccaaccgtttgctagtaaacgaggccaaacagactccca |
14458466 |
T |
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| Q |
201 |
gaaaatgtcgcttgcttgcgtcttgcttattctaaaatcacccgaaaggatgtgtactatttctatatatgatgtaatcttggagaaatctttttcttca |
300 |
Q |
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| T |
14458467 |
gaaaatgtcgcttgcttgcgtcttgcttattctaaaatcacctgaaaggatgtgtactatttctatatatgatgtaatcttggagaaatctttttcttca |
14458566 |
T |
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| Q |
301 |
agaatatcatagatagacttcatagcatttccttcaagatttgtaggatcattttgtgtaccaattcctactgc |
374 |
Q |
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| T |
14458567 |
agaatttcatagatagacttcatagcatttccttcaagatttgtaggatcattttgtgtaccaattcctactgc |
14458640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 4 - 374
Target Start/End: Original strand, 14467155 - 14467523
Alignment:
| Q |
4 |
attagtagagggtatgcagcaacttcatcgaggagttctttgatagaatcaaaataatcaacacccttcacgagtttcctcgaatattcttcaattccag |
103 |
Q |
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| T |
14467155 |
attagtagaggataagcagcaacttcatcgaggatatctttgatagaatggaaataatcaacacccttcactagattcctcgaatactcttcaattct-g |
14467253 |
T |
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| Q |
104 |
ggacaatgaaaattatagcactcttattagaaagaagactactaggttgctctgaatgccaaccgtttgctagtaaacgaggccaaacagactcccagaa |
203 |
Q |
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| T |
14467254 |
ggacaatgaaaattatagcactcttattagaaagaagactactaggttgctctgaatgccaacctttcgcaagtaatcgaggccaaacagcctcccagaa |
14467353 |
T |
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| Q |
204 |
aatgtcgcttgcttgcgtcttgcttattctaaaatcacccgaaaggatgtgtactatttctatatatgatgtaatcttggagaaatctttttcttcaaga |
303 |
Q |
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| T |
14467354 |
aatgccgctggcctgagtcttgcttattctaaaatcacctgagaggatgtgtactatttctatatatgatgtaatctt-gagaaatctttttcttcaaga |
14467452 |
T |
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| Q |
304 |
atatcatagatagacttcatagcatttccttcaagatttgtaggatcattttgtgtaccaattcctactgc |
374 |
Q |
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| T |
14467453 |
atttcatagatagacttcatagcatttccttcaagatttgtaagatcattttgtgcaccaattcctactgc |
14467523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 203 - 374
Target Start/End: Original strand, 12069152 - 12069314
Alignment:
| Q |
203 |
aaatgtcgcttgcttgcgtcttgcttattctaaaatcacccgaaaggatgtgtactatttctatatatgatgtaatcttggagaaatctttttcttcaag |
302 |
Q |
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||||||| || ||||| ||||||||||||| ||||||||| || ||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
12069152 |
aaatgtcactagcttgagtcttgcttattccaaaatcacctgagaggatgtgtactatttctata---------atcttggagaaatatttttcttcaag |
12069242 |
T |
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| Q |
303 |
aatatcatagatagacttcatagcatttccttcaagatttgtaggatcattttgtgtaccaattcctactgc |
374 |
Q |
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| T |
12069243 |
aatttcataaatagacttcaaatcatttccttcaagatttgtaaggtcattctgtttaccaattcctactgc |
12069314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 180 - 330
Target Start/End: Complemental strand, 2959149 - 2959000
Alignment:
| Q |
180 |
acgaggccaaacagactcccagaaaatgtcgcttgcttgcgtcttgcttattctaaaatcacccgaaaggatgtgtactatttctatatatgatgtaatc |
279 |
Q |
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|||||||||||||| ||| | |||||||| |||||||| || ||||||||||||||||| ||| |||||||| || |||||||||| ||| ||||||| |
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| T |
2959149 |
acgaggccaaacagtttccaa-aaaatgtcacttgcttgagttttgcttattctaaaatctcccataaggatgtatagtatttctataaatgttgtaatc |
2959051 |
T |
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| Q |
280 |
ttggagaaatctttttcttcaagaatatcatagatagacttcatagcattt |
330 |
Q |
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| T |
2959050 |
tttgagaaatatttttctttaagaaactcataaatggacttcatagaattt |
2959000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 263
Target Start/End: Complemental strand, 2941140 - 2941031
Alignment:
| Q |
153 |
ctctgaatgccaaccgtttgctagtaaacgaggccaaacagactcccagaaaatgtcgcttgcttgcgtcttgcttattctaaaatcacccgaaaggatg |
252 |
Q |
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||||||||||||||| |||| ||||| ||||||||||||| ||| | |||||||| |||||||| || |||||||| |||||||||||| ||||||| |
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| T |
2941140 |
ctctgaatgccaaccttttgtaagtaagcgaggccaaacagtttccaa-aaaatgtcacttgcttgagttttgcttatgctaaaatcacccataaggatg |
2941042 |
T |
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| Q |
253 |
tgtactatttc |
263 |
Q |
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| T |
2941041 |
tatagtatttc |
2941031 |
T |
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