View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11698_high_6 (Length: 362)
Name: NF11698_high_6
Description: NF11698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11698_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 19 - 349
Target Start/End: Complemental strand, 49819263 - 49818934
Alignment:
| Q |
19 |
acatcggccaaccattatcttctaaagtagaactctcaacaaactcactcgtgcacataatttattggacatatggagtgacatgagtgtactcgggtgg |
118 |
Q |
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| T |
49819263 |
acatcggccaaccattatctttcaaagtagaactctcaacaaactcactcgtgcacataatttattggacatatggagtgacataagtgtactcgagtgg |
49819164 |
T |
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| Q |
119 |
cacaataatggtgatatgatagtggatgatccaacaaattttcgatggactctaaaatcatcttaaaatttggattgaacctaaccgatgcactacacag |
218 |
Q |
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| T |
49819163 |
cacaataatggtgatatgatagtggatgatccaacaaattttagatggactccaaaatcatcttaaaatttgaattgaacctaacggatgcactacacag |
49819064 |
T |
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| Q |
219 |
tcgacttataagccttgctagttttatgtaagactcttaaaagctattgatgtcaattggttctagtctttttccacgtcatatggttgttccacttgta |
318 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
49819063 |
tcggcttataagccttgctagttttatgtaagactcttaaaagctattgatgtcaatt-gttctagtctttttccacgtcatatggttgttccacttgta |
49818965 |
T |
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| Q |
319 |
acgaaaaacagattgagcccgtaccatactg |
349 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
49818964 |
acgaaaaacagattgagcccgtaccatactg |
49818934 |
T |
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