View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11698_low_1 (Length: 620)
Name: NF11698_low_1
Description: NF11698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11698_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 16 - 602
Target Start/End: Original strand, 35405960 - 35406568
Alignment:
| Q |
16 |
ggttatacaccaactctttcgaggttttattagatttgatgttgaagttttagccgattaatgat----taggaatatttttatctcaaggcaaggtaat |
111 |
Q |
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| T |
35405960 |
ggttatacaccaactctttcgaggttttattagatttgatgttgaagttttaaccgattaatgatcatttaggaatattgttatctcaaggcaaggtaat |
35406059 |
T |
|
| Q |
112 |
tgtgaacgaacaataactctt----gaaggaaactcataacctaggttctttttcacattttcatgatttataaaagtgtcgtattattcaaaagttttt |
207 |
Q |
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| T |
35406060 |
tgtgaacgaacaataactctttaaggaaggaaactcataacctaggttctttttcacattttcatgatttctaaaagtgtcgtattcttcaaaagttttt |
35406159 |
T |
|
| Q |
208 |
aatagtcttggtattgagaacctcaagtagagaggggtagcactatcactatccttgtcccatgtttcatcttcgacaactccttttacgaaaattttaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35406160 |
aatagtcttggtattgagaacctcaagtagagaggggtagcactatcactatccttgtcccatgtttcatcttcgacaactccttttacgaaaattttaa |
35406259 |
T |
|
| Q |
308 |
gcatagttcaaagatgaataatttgactcctatttatagatagaaaatgggttgactacaatatggagccctgaagctgcaagcatgccaaacaagagac |
407 |
Q |
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| T |
35406260 |
gcatagttcaaagatgaataatttgactcctatttatagatagaaaatgggttgactacaatatggagccctgaagctgcaagcatgccaaacaagagag |
35406359 |
T |
|
| Q |
408 |
ataaatatggacta--------------ttcattttgaactgtcagtgaattgaaaaataattacagacataaatatggtaaacctgaagtttgtgtttt |
493 |
Q |
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| T |
35406360 |
ataaatatggactattctcacaccacccttcattttgaactgtcagtgaattgaaaaataattacagacataaatatggtaaacctgaagtttgtgtttt |
35406459 |
T |
|
| Q |
494 |
gcaacataagtgatactttatgtttatctagctagttgcaactacaaagtcgtctgagacgtaaactatatggtaaaaagtttttacttgtgttagatga |
593 |
Q |
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| T |
35406460 |
gcaacataagtgataatttatgtttatctagctagttgcaactacaaagtcgtctgagacgtaaactatatggtaaaaagtttttactagtgttagatga |
35406559 |
T |
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| Q |
594 |
tagtgtaaa |
602 |
Q |
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| T |
35406560 |
tagtgtaaa |
35406568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 535 - 595
Target Start/End: Complemental strand, 18118051 - 18117991
Alignment:
| Q |
535 |
ctacaaagtcgtctgagacgtaaactatatggtaaaaagtttttacttgtgttagatgata |
595 |
Q |
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| T |
18118051 |
ctacaaagtcgtctgagacgtaaactttatggtaaaaggtttttacttgtgttagatgata |
18117991 |
T |
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