View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11698_low_10 (Length: 361)
Name: NF11698_low_10
Description: NF11698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11698_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 11 - 345
Target Start/End: Complemental strand, 8720056 - 8719722
Alignment:
| Q |
11 |
cagagaagagcttggcagaggagattctgttacaaaacttcattgtgatatggcagatgcggtatgctacattatattataaattttatgatggtactaa |
110 |
Q |
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| T |
8720056 |
cagagaagagcttggcagaggagattctgttacaaaacttcattgtgatatggcagatgcggtatgctacattatattataaattttatgatgttactaa |
8719957 |
T |
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| Q |
111 |
gtatatgatggtactaagtttactttattgttcaataattttgacaggtcaatattttgactcatataagtgaggtgaaattaacagatgaacaacttta |
210 |
Q |
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| T |
8719956 |
gtatatgatggtactaagtttactttattgttcaataattttgacaggtcaatattttgactcatataagtgaggtgaaattaacagatgaacaacttta |
8719857 |
T |
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| Q |
211 |
tgctattnnnnnnnnnnnnngcgcacataagactcaagataagaaagaaggtcttgttcaagataatggaggtcattttgagatcaatggaaagctattt |
310 |
Q |
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| T |
8719856 |
tgctattaaaaaaataaaaagcgcacataagactcaagataagaaagaaggtcttgttcaagataatggaggtcattttgagatcaatggaaagctattt |
8719757 |
T |
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| Q |
311 |
ccaaatgaagttccatcaatcacagaagatacatc |
345 |
Q |
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| T |
8719756 |
ccaaatgaagttccatcaatcacagaagatacatc |
8719722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 21 - 217
Target Start/End: Complemental strand, 8675003 - 8674789
Alignment:
| Q |
21 |
cttggcagaggagattctgttacaaaacttcattgtgatatggcagatgcggtatgctacattatattataaattttatga----------------tgg |
104 |
Q |
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| T |
8675003 |
cttggcagaggagattctgttacaaaactccattgtgatatggcagacgcggtatggtacattatattataacttttatgtactttaaacgttatattgg |
8674904 |
T |
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| Q |
105 |
tacta--agtatatgatggtactaagtttactttattgttcaataattttgacaggtcaatattttgactcatataagtgaggtgaaattaacagatgaa |
202 |
Q |
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| | | |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8674903 |
tgcgacaagtataagatggtactaagtttactttattgttcaataattttgacaggttaatattttgactcatataactgaggtgaaattaacagatgag |
8674804 |
T |
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| Q |
203 |
caactttatgctatt |
217 |
Q |
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| T |
8674803 |
caaatttatgctatt |
8674789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 254 - 344
Target Start/End: Complemental strand, 8673520 - 8673430
Alignment:
| Q |
254 |
aaagaaggtcttgttcaagataatggaggtcattttgagatcaatggaaagctatttccaaatgaagttccatcaatcacagaagatacat |
344 |
Q |
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| T |
8673520 |
aaagagggtcttgttcaagataatggaggtccttttaagatcaaaggaaagctatttctaaatgaagttccaccaatcacagaagatacat |
8673430 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 8592203 - 8592125
Alignment:
| Q |
11 |
cagagaagagcttggcagaggagattctgttacaaaacttcattgtgatatggcagatgcggtatgctacattatatta |
89 |
Q |
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| T |
8592203 |
cagagaagagcttggcagaggagattctgttacaaaacttcattgtgatattgcagacgcagtatgctacattacatta |
8592125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 118 - 217
Target Start/End: Complemental strand, 8592076 - 8591977
Alignment:
| Q |
118 |
atggtactaagtttactttattgttcaataattttgacaggtcaatattttgactcatataagtgaggtgaaattaacagatgaacaactttatgctatt |
217 |
Q |
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| T |
8592076 |
atggtactaaatttactttattgttcaataactttgacaggtaaacattctgactcatataactgaggtgaaattaactgaagatcaactttgtgctatt |
8591977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 7e-34; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 252 - 345
Target Start/End: Original strand, 23439372 - 23439465
Alignment:
| Q |
252 |
agaaagaaggtcttgttcaagataatggaggtcattttgagatcaatggaaagctatttccaaatgaagttccatcaatcacagaagatacatc |
345 |
Q |
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||||||| ||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
23439372 |
agaaagagggtcttgttcaagataatggaggtccttttgagatcaaagcaaagctatttccaaatgaagttccaccaatcacagaagatacatc |
23439465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 23437491 - 23437573
Alignment:
| Q |
18 |
gagcttggcagaggagattctgttacaaaacttcattgtgatatggcagatgcggtatgctacattatattataaattttatg |
100 |
Q |
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| T |
23437491 |
gagcttggcagaggagattctgttacaaaactccattgtgatatggcagacgcggtatggtacattatattataacttttatg |
23437573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 23437893 - 23437951
Alignment:
| Q |
159 |
tcaatattttgactcatataagtgaggtgaaattaacagatgaacaactttatgctatt |
217 |
Q |
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| T |
23437893 |
tcaatattttgactcatataactgaggtgaaattaacagatgaacaactttatgctatt |
23437951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 55411359 - 55411293
Alignment:
| Q |
12 |
agagaagagcttggcagaggagattctgttacaaaacttcattgtgatatggcagatgcggtatgct |
78 |
Q |
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| T |
55411359 |
agagaagaacttggcaggggagactctgtaacaaagcttcactgtgatatgtcagatgcggtatgct |
55411293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 5116802 - 5116746
Alignment:
| Q |
138 |
ttgttcaataattttgacaggtcaatattttgactcatataagtgaggtgaaattaa |
194 |
Q |
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| T |
5116802 |
ttgttcaataatgttcataggtgaatattttgactcatacaagtgaggtaaaattaa |
5116746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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