View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11698_low_11 (Length: 346)
Name: NF11698_low_11
Description: NF11698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11698_low_11 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 19 - 341
Target Start/End: Complemental strand, 37652273 - 37651951
Alignment:
| Q |
19 |
gtatccttattaacggtcaattcccaggacctgaaatcaacagcaccagcaacaacaatgttgttgttaatgtattcaacaaccttgatgaaccattgct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
37652273 |
gtatccttattaacggtcaattcccaggacctgaaatcaacagcactagcaacaacaatgtcgttgttaatgtattcaacaaccttgatgaaccattgct |
37652174 |
T |
|
| Q |
119 |
tttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtacccttggtgttcaatgccctattcttcctggaactaactacacctacaaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37652173 |
tttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtacccttggtgttcaatgccctattcttcctggaactaactacacctacaaa |
37652074 |
T |
|
| Q |
219 |
ttccaagtgaaggatcagattggaagttacttttactaccctaccaccggtcttcaaagagccgttggtggtttcggtggtcttagaatcttcagtcgtc |
318 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37652073 |
tttcaagtgaaggatcaaattggaagttacttttactaccctaccacaggtcttcaaagagccgttggtggtttcggtggtcttagaatcttcagtcgtc |
37651974 |
T |
|
| Q |
319 |
tgttgatccctgttccctatgct |
341 |
Q |
| |
|
|||||||||||||||| |||||| |
|
|
| T |
37651973 |
tgttgatccctgttccttatgct |
37651951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 19 - 341
Target Start/End: Complemental strand, 37635246 - 37634924
Alignment:
| Q |
19 |
gtatccttattaacggtcaattcccaggacctgaaatcaacagcaccagcaacaacaatgttgttgttaatgtattcaacaaccttgatgaaccattgct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37635246 |
gtatccttattaacggtcaattcccaggacctgaaatcaacagcactagcaataacaatgttgttgttaatgtattcaacaaccttgatgaaccattgct |
37635147 |
T |
|
| Q |
119 |
tttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtacccttggtgttcaatgccctattcttcctggaactaactacacctacaaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||| ||||||||| |
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|
| T |
37635146 |
tttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtaccgctggtgttcaatgccccattcttcctgggactaactatacctacaaa |
37635047 |
T |
|
| Q |
219 |
ttccaagtgaaggatcagattggaagttacttttactaccctaccaccggtcttcaaagagccgttggtggtttcggtggtcttagaatcttcagtcgtc |
318 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37635046 |
ttccaagtgaaggatcaaattggaagttacttttactaccctaccacaggtcttcaaagagccgttggtggtttcggtggtcttagaatcttcagtcgtc |
37634947 |
T |
|
| Q |
319 |
tgttgatccctgttccctatgct |
341 |
Q |
| |
|
|||||||||||||||| |||||| |
|
|
| T |
37634946 |
tgttgatccctgttccttatgct |
37634924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 19 - 341
Target Start/End: Complemental strand, 37638160 - 37637838
Alignment:
| Q |
19 |
gtatccttattaacggtcaattcccaggacctgaaatcaacagcaccagcaacaacaatgttgttgttaatgtattcaacaaccttgatgaaccattgct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37638160 |
gtatccttattaacggtcaattcccaggacctgaaatcaacagcactagcaataacaatgttgttgttaatgtattcaacaaccttgatgaaccattgct |
37638061 |
T |
|
| Q |
119 |
tttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtacccttggtgttcaatgccctattcttcctggaactaactacacctacaaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||| ||||||||| |
|
|
| T |
37638060 |
tttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtaccgctggtgttcaatgccccattcttcctgggactaactatacctacaaa |
37637961 |
T |
|
| Q |
219 |
ttccaagtgaaggatcagattggaagttacttttactaccctaccaccggtcttcaaagagccgttggtggtttcggtggtcttagaatcttcagtcgtc |
318 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37637960 |
ttccaagtgaaggatcaaattggaagttacttttactaccctaccacaggtcttcaaagagccgttggtggtttcggtggtcttagaatcttcagtcgtc |
37637861 |
T |
|
| Q |
319 |
tgttgatccctgttccctatgct |
341 |
Q |
| |
|
|||||||||||||||| |||||| |
|
|
| T |
37637860 |
tgttgatccctgttccttatgct |
37637838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 19 - 341
Target Start/End: Complemental strand, 37646448 - 37646126
Alignment:
| Q |
19 |
gtatccttattaacggtcaattcccaggacctgaaatcaacagcaccagcaacaacaatgttgttgttaatgtattcaacaaccttgatgaaccattgct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37646448 |
gtatccttattaacggtcaattcccaggacctgaaatcaacagcactagcaataacaatgttgttgttaatgtattcaacaaccttgatgaaccattgct |
37646349 |
T |
|
| Q |
119 |
tttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtacccttggtgttcaatgccctattcttcctggaactaactacacctacaaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||| ||||||||| |
|
|
| T |
37646348 |
tttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtaccgctggtgttcaatgccccattcttcctgggactaactatacctacaaa |
37646249 |
T |
|
| Q |
219 |
ttccaagtgaaggatcagattggaagttacttttactaccctaccaccggtcttcaaagagccgttggtggtttcggtggtcttagaatcttcagtcgtc |
318 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37646248 |
ttccaagtgaaggatcaaattggaagttacttttactaccctaccacaggtcttcaaagagccgttggtggtttcggtggtcttagaatcttcagtcgtc |
37646149 |
T |
|
| Q |
319 |
tgttgatccctgttccctatgct |
341 |
Q |
| |
|
|||||||||||||||| |||||| |
|
|
| T |
37646148 |
tgttgatccctgttccttatgct |
37646126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 19 - 341
Target Start/End: Complemental strand, 37649361 - 37649039
Alignment:
| Q |
19 |
gtatccttattaacggtcaattcccaggacctgaaatcaacagcaccagcaacaacaatgttgttgttaatgtattcaacaaccttgatgaaccattgct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37649361 |
gtatccttattaacggtcaattcccaggacctgaaatcaacagcactagcaataacaatgttgttgttaatgtattcaacaaccttgatgaaccattgct |
37649262 |
T |
|
| Q |
119 |
tttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtacccttggtgttcaatgccctattcttcctggaactaactacacctacaaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||| ||||||||| |
|
|
| T |
37649261 |
tttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtaccgctggtgttcaatgccccattcttcctgggactaactatacctacaaa |
37649162 |
T |
|
| Q |
219 |
ttccaagtgaaggatcagattggaagttacttttactaccctaccaccggtcttcaaagagccgttggtggtttcggtggtcttagaatcttcagtcgtc |
318 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37649161 |
ttccaagtgaaggatcaaattggaagttacttttactaccctaccacaggtcttcaaagagccgttggtggtttcggtggtcttagaatcttcagtcgtc |
37649062 |
T |
|
| Q |
319 |
tgttgatccctgttccctatgct |
341 |
Q |
| |
|
|||||||||||||||| |||||| |
|
|
| T |
37649061 |
tgttgatccctgttccttatgct |
37649039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 17 - 341
Target Start/End: Complemental strand, 37641076 - 37640752
Alignment:
| Q |
17 |
cagtatccttattaacggtcaattcccaggacctgaaatcaacagcaccagcaacaacaatgttgttgttaatgtattcaacaaccttgatgaaccattg |
116 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
37641076 |
cagtatccttattaatggtcaattcccaggacctgaaatcaacagcactagcaataacaatgttgttgctaatgtattcaacaaccttgatgaaccattg |
37640977 |
T |
|
| Q |
117 |
cttttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtacccttggtgttcaatgccctattcttcctggaactaactacacctaca |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||| ||||||| |
|
|
| T |
37640976 |
cttttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtacccctggtgttcaatgccccattcttcctgggactaactatacctaca |
37640877 |
T |
|
| Q |
217 |
aattccaagtgaaggatcagattggaagttacttttactaccctaccaccggtcttcaaagagccgttggtggtttcggtggtcttagaatcttcagtcg |
316 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37640876 |
aattccaagtgaaggatcaaattggaagttacttttactaccctaccacaggtcttcaaagagccgttggtggtttcggtggtcttagaatcttcagtcg |
37640777 |
T |
|
| Q |
317 |
tctgttgatccctgttccctatgct |
341 |
Q |
| |
|
|||||||||||||||||| |||||| |
|
|
| T |
37640776 |
tctgttgatccctgttccttatgct |
37640752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 30 - 341
Target Start/End: Complemental strand, 32388572 - 32388261
Alignment:
| Q |
30 |
aacggtcaattcccaggacctgaaatcaacagcaccagcaacaacaatgttgttgttaatgtattcaacaaccttgatgaaccattgcttttcacatggc |
129 |
Q |
| |
|
|||||||||||||| ||||||||||| ||| | |||||||||||||| |||| ||||| || ||||||||||||||||| ||| | |||||||||||| |
|
|
| T |
32388572 |
aacggtcaattcccgggacctgaaattaacggtaccagcaacaacaacattgtagttaacgttttcaacaaccttgatgagccactccttttcacatgga |
32388473 |
T |
|
| Q |
130 |
acggtgttcaacagaggaagaattcatggcaagatggtacccttggtgttcaatgccctattcttcctggaactaactacacctacaaattccaagtgaa |
229 |
Q |
| |
|
|||| ||||||| ||||| || || ||| ||||| || || || ||||| |||||| || ||||| |||||||||||||||||||| || || |
|
|
| T |
32388472 |
gcggtattcaacaaaggaaaaactcgtgggccgatggaacatcgggagtccaatgtcctattgccccgggaaccaactacacctacaaattccaggttaa |
32388373 |
T |
|
| Q |
230 |
ggatcagattggaagttacttttactaccctaccaccggtcttcaaagagccgttggtggtttcggtggtcttagaatcttcagtcgtctgttgatccct |
329 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| |||||||| ||||| | |||||| ||||||| ||||| ||| ||| || ||||||||||| |
|
|
| T |
32388372 |
ggatcaaattggtagttacttttactaccctactaccggtctcatgagagctgccggtggtatcggtggaattagagtctacagccgattgttgatccct |
32388273 |
T |
|
| Q |
330 |
gttccctatgct |
341 |
Q |
| |
|
|| || |||||| |
|
|
| T |
32388272 |
gtcccatatgct |
32388261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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