View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11698_low_13 (Length: 325)
Name: NF11698_low_13
Description: NF11698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11698_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 14 - 310
Target Start/End: Complemental strand, 7655810 - 7655514
Alignment:
| Q |
14 |
agagggtactgtaagtaatagtgtttaaaggtaaagattaatggttaccattccaccagtagcagacttgagaagaatacaagcaacaactgaaccaagt |
113 |
Q |
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| T |
7655810 |
agagggtactgtaagtaatagtgtttaaaggtaaagattaatggttaccattccaccagtagcagacttgagaagaatacaagcaacaactgaaccaagt |
7655711 |
T |
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| Q |
114 |
aactgtgcaatccaatataaaatacttctcaaaagtgtaatgtttcctccaatgaaggcaccaaatgtgactgcagggttcacatgtccaccagagatgt |
213 |
Q |
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| T |
7655710 |
aactgtgcaatccaatataaaatacttctcaaaagtgtaatgtttcctccaatgaaggcaccaaatgtgactgcagggttcacatgtccaccagatatgt |
7655611 |
T |
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| Q |
214 |
ttgctccaacagaaacagcaacaaatagtccaaatgcatgagatagtgatgcagctatgaggccagctggtgttgcagggccattattggtaagttt |
310 |
Q |
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| T |
7655610 |
ttgctccaacagaaacggcaacaaatagtccaaatgcatgagatagtgatgcagctatgaggccagcaggtgttgcagggccattattggtaagttt |
7655514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 238
Target Start/End: Original strand, 41418436 - 41418521
Alignment:
| Q |
153 |
atgtttcctccaatgaaggcaccaaatgtgactgcagggttcacatgtccaccagagatgtttgctccaacagaaacagcaacaaa |
238 |
Q |
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| T |
41418436 |
atgttaccaccaacgaaggcaccgaaggtgacagcggggttgacatgtccaccggagatgttagcaccaacggagacagcaacaaa |
41418521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 57 - 274
Target Start/End: Original strand, 52102949 - 52103166
Alignment:
| Q |
57 |
gttaccattccaccagtagca-gacttgagaagaatacaagcaacaactgaaccaagtaactgtgcaatccaatataaaatacttctcaaaagtgtaatg |
155 |
Q |
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| T |
52102949 |
gttaccattccagcagt-gcatgaattgagaagaatgcaagcaacaactgcaccaagtaactgtgcaatccaatacaaaatacttctcaagaaggtaatg |
52103047 |
T |
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| Q |
156 |
tttcctccaatgaaggcaccaaatgtgactgcagggttcacatgtccaccagagatgtttgctccaacagaaacagcaacaaatagtccaaatgcatgag |
255 |
Q |
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| T |
52103048 |
tttcctccaatgaaagcaccaaatgtgactgcagggttcacatgtccaccagaaatgtttgcaccaacagaaacagccacaaataacccaaatgcatgag |
52103147 |
T |
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| Q |
256 |
atagtgatgcagctatgag |
274 |
Q |
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| T |
52103148 |
ataatgatgcaactatgag |
52103166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 93 - 270
Target Start/End: Complemental strand, 23339615 - 23339438
Alignment:
| Q |
93 |
caagcaacaactgaaccaagtaactgtgcaatccaatataaaatacttctcaaaagtgtaatgtttcctccaatgaaggcaccaaatgtgactgcagggt |
192 |
Q |
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| T |
23339615 |
caagcaacaacagaaccaagcaactgagcaatccaatacaaaaggcctctaatgagtgtaatgtgtccaccaatgaatgcaccaaaagtgacagcagggt |
23339516 |
T |
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| Q |
193 |
tcacatgtccaccagagatgtttgctccaacagaaacagcaacaaatagtccaaatgcatgagatagtgatgcagcta |
270 |
Q |
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| T |
23339515 |
tgacatgtccaccagaaatgttagcaccaacagagacagcaacaaaaagtgcaaatgcatgtgatagtgatgcagcta |
23339438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 43585250 - 43585201
Alignment:
| Q |
189 |
gggttcacatgtccaccagagatgtttgctccaacagaaacagcaacaaa |
238 |
Q |
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| T |
43585250 |
gggttgacatgtccaccagatatgttggctccaacagaaacagcaacaaa |
43585201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 4190170 - 4190243
Alignment:
| Q |
174 |
ccaaatgtgactgcagggttcacatgtccaccagagatgtttgctccaacagaaacagcaacaaatagtccaaa |
247 |
Q |
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| T |
4190170 |
ccaaaggtgacagcagggttgacatgaccaccagaaatgttggcaccaactgcaacagcaacaaaaagtgcaaa |
4190243 |
T |
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