View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11698_low_14 (Length: 310)
Name: NF11698_low_14
Description: NF11698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11698_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 16 - 306
Target Start/End: Complemental strand, 34463623 - 34463334
Alignment:
| Q |
16 |
agcataggttttcacaatatcaatgtcccaaatatgacgagttgttacctcaactagtttgattcaagtgtcaaagaaattaataagttagaaagttgag |
115 |
Q |
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| T |
34463623 |
agcatagtttttcacaatatcaatgtcccaaatgtgacgaattgttacctcaactagtttgattcaagtgtcaaagaaattaataagttaaaaagttgag |
34463524 |
T |
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| Q |
116 |
ggttgaagccccgactaaaaataacaatgatgtcccaaatgtgatataacgttaattattgcaagtaggagtttgcataattttcttttttgttaattct |
215 |
Q |
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| T |
34463523 |
ggttcaagccccgactaaaaataacaatgatgtcccaaatgtgatataacgttaattattgcaagtaggagtttgcataatttt-ttttttgttaattct |
34463425 |
T |
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| Q |
216 |
caccatgccccaaaaacctgggttagagactccaacaccatcaggagggcacttgtcacataacacatccattcttaatgcaaccttattg |
306 |
Q |
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| T |
34463424 |
caccatgccccaaaaacctgggttagagactccaacaccatcaggagggcacttgtcacataacacatccattcttaatgcaaccttattg |
34463334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 148 - 306
Target Start/End: Complemental strand, 34447215 - 34447059
Alignment:
| Q |
148 |
tcccaaatgtgatataacgttaattattgcaagtaggagtttgcataattttcttttttgttaattctcaccatgccccaaaaacctgggttagagactc |
247 |
Q |
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|||||||||||| | ||| ||||||||| ||||||||||| ||||| | | | |||||||||| ||||||||||||||||| ||||||||||||| | || |
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| T |
34447215 |
tcccaaatgtgacacaaccttaattatttcaagtaggagtatgcattagtat-ttttttgtta-ttctcaccatgccccaataacctgggttagaaattc |
34447118 |
T |
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| Q |
248 |
caacaccatcaggagggcacttgtcacataacacatccattcttaatgcaaccttattg |
306 |
Q |
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| T |
34447117 |
caacaccatcaaatggacaattatcacatagcacatccattctcaatgcaaccttattg |
34447059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 201 - 306
Target Start/End: Complemental strand, 34436175 - 34436070
Alignment:
| Q |
201 |
ttttttgttaattctcaccatgccccaaaaacctgggttagagactccaacaccatcaggagggcacttgtcacataacacatccattcttaatgcaacc |
300 |
Q |
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|||||| |||||||| ||||||||| ||||||||||||||| | ||||||||||||| ||||| || ||||||| |||||| ||||| ||||||||| |
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| T |
34436175 |
tttttttttaattcttaccatgcccttaaaacctgggttagaaattccaacaccatcaactgggcaattatcacatagcacatcaattctcaatgcaacc |
34436076 |
T |
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| Q |
301 |
ttattg |
306 |
Q |
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|||||| |
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| T |
34436075 |
ttattg |
34436070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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