View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11698_low_15 (Length: 303)
Name: NF11698_low_15
Description: NF11698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11698_low_15 |
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| [»] scaffold0128 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 16 - 288
Target Start/End: Complemental strand, 25866444 - 25866172
Alignment:
| Q |
16 |
tgtgcttgataccatttatcggaaactagattttgacgatcaatttcaatttgctggtgtttgcaaggagtggaggcgtgttcagaaaatttattggaga |
115 |
Q |
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| T |
25866444 |
tgtgcttgataccatttctcgaaaactagattttgacgatcaatttcaatttgctggtgtttgtaaggagtggaggcgtgttcagaaaatttattggaga |
25866345 |
T |
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| Q |
116 |
aggttcctagcatcccaatcaccacttcttgttcaaacaactccgtatgatacgaaatattgttctttctatagcatacctgaaaaacgagtttaccgtt |
215 |
Q |
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| T |
25866344 |
aggttcctagcatcccaatcaccacttcttgttcaaacaactccgtatgatacgaaatattgttctttctatagcatacctgaaaaacgagtttaccgtt |
25866245 |
T |
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| Q |
216 |
ctaagagtagtgtttattttggctcctatggtggttcgtctagtggatatctgatcatgccaggtgcaaataa |
288 |
Q |
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| T |
25866244 |
ctaagaggagtgtttattttggctcctatggtggttcgtctagtggatatttgatcatgccaggtgcaaataa |
25866172 |
T |
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Target: scaffold0128 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 16628 - 16433
Alignment:
| Q |
18 |
tgcttgataccatttatcggaaactagattttgacgatcaatttcaatttgctggtgtttgcaaggagtggaggcgtgttcagaaaatttattggagaag |
117 |
Q |
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| T |
16628 |
tgcttgataccgtatcccgaaaactagattttgatgatttatttcaattttctagtgtttgtaaagagtggaggagagttcaaaaaatttattggagaat |
16529 |
T |
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| Q |
118 |
gttcctagcatcccaatcaccacttcttgttcaaacaactccgtatgatacgaaatattgttctttctatagcatacctgaaaaacgagtttaccg |
213 |
Q |
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| T |
16528 |
tttcatggtatcacaataaccactatttgttcaaaaaacttcatatgtaaataaatattgttctttttatagcatacttgaaaaacgagcttaccg |
16433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 45 - 213
Target Start/End: Original strand, 16750 - 16916
Alignment:
| Q |
45 |
attttgacgatcaatttcaatttgctggtgtttgcaaggagtggaggcgtgttcagaaaatttattggagaaggttcctagcatcccaatcaccacttct |
144 |
Q |
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| T |
16750 |
atttttacgatctatttcaatatggtggt--ttgcaaggagtggagcagagttcaaaaaaattattggagaattttcatggtatcacaatcacgactact |
16847 |
T |
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| Q |
145 |
tgttcaaacaactccgtatgatacgaaatattgttctttctatagcatacctgaaaaacgagtttaccg |
213 |
Q |
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| T |
16848 |
tgttcaaacaacttcatatgcaaataaattttgttctttttatagcatacctgaaaaacgagcttaccg |
16916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 563764 - 563666
Alignment:
| Q |
18 |
tgcttgataccatttatcggaaactagattttgacgatcaatttcaatttgctggtgtttgcaaggagtggaggcgtgttcagaaaatttattggagaa |
116 |
Q |
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| T |
563764 |
tgcttgatatcatttctagaaaactagattttgacgacctctttgaatttgctggtgtgtgcaagaattggagggaatttcataaaatttatttgagaa |
563666 |
T |
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