View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11698_low_16 (Length: 284)
Name: NF11698_low_16
Description: NF11698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11698_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 14 - 268
Target Start/End: Original strand, 43585134 - 43585388
Alignment:
| Q |
14 |
gacatcaggtgcagctcttgatcctgctggattagtagcagttgctgtttgtcatggttttgctctttttgttgctgtttctgttggagccaacatatct |
113 |
Q |
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| T |
43585134 |
gacatcaggtgcagctcttgatcctgctggattagtagcagttgctgtttgtcatggttttgctctttttgttgctgtttctgttggagccaacatatct |
43585233 |
T |
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| Q |
114 |
ggtggacatgtcaacccagctgtgacctttgggttggctattgggggacagatcactatcctcactggtatcttctactggattgcacaacttcttggtt |
213 |
Q |
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| T |
43585234 |
ggtggacatgtcaacccagctgtgacctttgggttggctattgggggacagatcactatcctcactggtatcttctactggattgcacaacttcttggtt |
43585333 |
T |
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| Q |
214 |
ccatagtagcatgctttctcctcaagtatgccacaggaggcttggtatgtttatc |
268 |
Q |
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| T |
43585334 |
ccatagtggcatgctttctcctcaagtatgccacaggaggcttggtatgtttatc |
43585388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 129; Significance: 8e-67; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 14 - 266
Target Start/End: Complemental strand, 4190301 - 4190049
Alignment:
| Q |
14 |
gacatcaggtgcagctcttgatcctgctggattagtagcagttgctgtttgtcatggttttgctctttttgttgctgtttctgttggagccaacatatct |
113 |
Q |
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| T |
4190301 |
gacatcagatgcagctcttgatccagcagggttactagcagttgctgtttgccatggttttgcactttttgttgctgttgcagttggtgccaacatttct |
4190202 |
T |
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| Q |
114 |
ggtggacatgtcaacccagctgtgacctttgggttggctattgggggacagatcactatcctcactggtatcttctactggattgcacaacttcttggtt |
213 |
Q |
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| T |
4190201 |
ggtggtcatgtcaaccctgctgtcacctttggattggctgttggtggacagattaccatcctcactggtatcttctactggattgctcagcttcttggat |
4190102 |
T |
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| Q |
214 |
ccatagtagcatgctttctcctcaagtatgccacaggaggcttggtatgttta |
266 |
Q |
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| T |
4190101 |
ccattgttgcatgttttcttctccagtttgtcactggaggcttggtaagttta |
4190049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 72 - 145
Target Start/End: Original strand, 23339461 - 23339534
Alignment:
| Q |
72 |
tttgctctttttgttgctgtttctgttggagccaacatatctggtggacatgtcaacccagctgtgacctttgg |
145 |
Q |
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| T |
23339461 |
tttgcactttttgttgctgtctctgttggtgctaacatttctggtggacatgtcaaccctgctgtcacttttgg |
23339534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 7655586 - 7655635
Alignment:
| Q |
81 |
tttgttgctgtttctgttggagccaacatatctggtggacatgtcaaccc |
130 |
Q |
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| T |
7655586 |
tttgttgccgtttctgttggagcaaacatatctggtggacatgtgaaccc |
7655635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 41418527 - 41418460
Alignment:
| Q |
75 |
gctctttttgttgctgtttctgttggagccaacatatctggtggacatgtcaacccagctgtgacctt |
142 |
Q |
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| T |
41418527 |
gctctctttgttgctgtctccgttggtgctaacatctccggtggacatgtcaaccccgctgtcacctt |
41418460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 217
Target Start/End: Original strand, 3929549 - 3929665
Alignment:
| Q |
101 |
agccaacatatctggtggacatgtcaacccagctgtgacctttgggttggctattgggggacagatcactatcctcactggtatcttctactggattgca |
200 |
Q |
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| T |
3929549 |
agccaacatctcaggtggacatttgaacccagctgttacttttggattagccattggaggcaacatcaccatcctaactggtctcttctattggattgcc |
3929648 |
T |
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| Q |
201 |
caacttcttggttccat |
217 |
Q |
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| T |
3929649 |
caattgcttggctccat |
3929665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 130
Target Start/End: Complemental strand, 52103130 - 52103081
Alignment:
| Q |
81 |
tttgttgctgtttctgttggagccaacatatctggtggacatgtcaaccc |
130 |
Q |
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| T |
52103130 |
tttgtggctgtttctgttggtgcaaacatttctggtggacatgtgaaccc |
52103081 |
T |
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