View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11698_low_21 (Length: 231)

Name: NF11698_low_21
Description: NF11698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11698_low_21
NF11698_low_21
[»] chr8 (7 HSPs)
chr8 (47-147)||(35502770-35502870)
chr8 (188-231)||(5642378-5642421)
chr8 (188-231)||(5644319-5644362)
chr8 (188-227)||(27630937-27630976)
chr8 (188-231)||(29910200-29910243)
chr8 (188-227)||(38174225-38174264)
chr8 (189-227)||(27300387-27300425)
[»] chr2 (11 HSPs)
chr2 (150-231)||(35965577-35965658)
chr2 (151-227)||(42554779-42554855)
chr2 (188-231)||(13711101-13711144)
chr2 (188-231)||(38600854-38600897)
chr2 (188-227)||(42665804-42665843)
chr2 (189-223)||(9449411-9449445)
chr2 (189-231)||(11828808-11828850)
chr2 (189-227)||(45202124-45202162)
chr2 (188-216)||(29349546-29349574)
chr2 (189-225)||(39744588-39744624)
chr2 (191-227)||(42251912-42251948)
[»] chr3 (10 HSPs)
chr3 (151-227)||(43900749-43900825)
chr3 (188-231)||(8868912-8868955)
chr3 (188-227)||(22153904-22153943)
chr3 (189-227)||(1834547-1834585)
chr3 (189-227)||(3484800-3484838)
chr3 (189-227)||(29846883-29846921)
chr3 (188-225)||(37323707-37323744)
chr3 (188-225)||(52678571-52678608)
chr3 (188-224)||(7209-7245)
chr3 (188-228)||(622451-622491)
[»] chr1 (13 HSPs)
chr1 (151-227)||(11068428-11068504)
chr1 (150-227)||(15059641-15059719)
chr1 (188-223)||(12489577-12489612)
chr1 (188-227)||(18541043-18541082)
chr1 (188-227)||(30196754-30196793)
chr1 (188-227)||(39815386-39815425)
chr1 (188-227)||(45470832-45470871)
chr1 (188-227)||(49596275-49596314)
chr1 (151-225)||(30530393-30530467)
chr1 (189-227)||(48256948-48256986)
chr1 (188-216)||(18434835-18434863)
chr1 (188-216)||(26967251-26967279)
chr1 (191-227)||(48576497-48576533)
[»] scaffold0014 (1 HSPs)
scaffold0014 (151-225)||(199269-199343)
[»] chr5 (11 HSPs)
chr5 (151-227)||(34952398-34952474)
chr5 (188-227)||(2117616-2117655)
chr5 (188-227)||(33910080-33910119)
chr5 (188-227)||(40566209-40566248)
chr5 (189-227)||(8725414-8725452)
chr5 (189-223)||(29803266-29803300)
chr5 (189-227)||(31024997-31025035)
chr5 (189-231)||(32682117-32682159)
chr5 (188-225)||(5996707-5996744)
chr5 (189-221)||(19437298-19437330)
chr5 (195-231)||(19981428-19981464)
[»] chr4 (9 HSPs)
chr4 (151-227)||(46912791-46912867)
chr4 (188-227)||(4511854-4511893)
chr4 (188-227)||(17363270-17363309)
chr4 (188-227)||(36081839-36081878)
chr4 (189-227)||(1688420-1688458)
chr4 (189-227)||(7161517-7161555)
chr4 (189-227)||(27384217-27384255)
chr4 (191-231)||(11493182-11493222)
chr4 (191-227)||(35332749-35332785)
[»] chr7 (6 HSPs)
chr7 (188-231)||(21037222-21037265)
chr7 (188-223)||(26123407-26123442)
chr7 (188-227)||(36186868-36186907)
chr7 (188-223)||(47905112-47905147)
chr7 (189-227)||(7295492-7295530)
chr7 (159-225)||(5724050-5724115)
[»] chr6 (6 HSPs)
chr6 (188-227)||(11785395-11785434)
chr6 (188-227)||(23633315-23633354)
chr6 (189-227)||(7693356-7693394)
chr6 (189-227)||(30253305-30253343)
chr6 (188-225)||(14094951-14094988)
chr6 (189-229)||(7304115-7304155)
[»] scaffold0009 (1 HSPs)
scaffold0009 (189-226)||(263688-263725)


Alignment Details
Target: chr8 (Bit Score: 97; Significance: 8e-48; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 47 - 147
Target Start/End: Original strand, 35502770 - 35502870
Alignment:
Q  47 gaaagaatcatccacttgtaagtaaggtatttgtttaatatcgtctctctctattttttaaaggataatttcgtctcattgtatttccgccattcaaaat 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  35502770 gaaagaatcatccacttgtaagtaaggtatttgtttaatatcgtctctctctattttttaaaggataatatcgtctcattgtatttccgccattcaaaat 35502869  T
Q  147 a 147  Q
    |    
T  35502870 a 35502870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 5642421 - 5642378
Alignment:
Q  188 gacaactttctctctcacattcacattatattcttattctttct 231  Q
    ||||||||||||||||| | |||||||||||| |||||||||||    
T  5642421 gacaactttctctctcatactcacattatatttttattctttct 5642378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 5644362 - 5644319
Alignment:
Q  188 gacaactttctctctcacattcacattatattcttattctttct 231  Q
    ||||||||||||||||| | |||||||||||| |||||||||||    
T  5644362 gacaactttctctctcatactcacattatatttttattctttct 5644319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 27630937 - 27630976
Alignment:
Q  188 gacaactttctctctcacattcacattatattcttattct 227  Q
    ||||||||||||||||| | ||||||||||||||||||||    
T  27630937 gacaactttctctctcatactcacattatattcttattct 27630976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 29910243 - 29910200
Alignment:
Q  188 gacaactttctctctcacattcacattatattcttattctttct 231  Q
    ||||||||||||| ||| | ||||||||||||||||||||||||    
T  29910243 gacaactttctctttcatactcacattatattcttattctttct 29910200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 38174264 - 38174225
Alignment:
Q  188 gacaactttctctctcacattcacattatattcttattct 227  Q
    ||||||||||||||||| | ||||||||||||||||||||    
T  38174264 gacaactttctctctcatactcacattatattcttattct 38174225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 227
Target Start/End: Original strand, 27300387 - 27300425
Alignment:
Q  189 acaactttctctctcacattcacattatattcttattct 227  Q
    |||||||||||||||| ||||||||||| ||||||||||    
T  27300387 acaactttctctctcatattcacattatcttcttattct 27300425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 231
Target Start/End: Original strand, 35965577 - 35965658
Alignment:
Q  150 aaaatgatatt-gtacaaccactttattacaannnnnnngacaactttctctctcacattcacattatattcttattctttct 231  Q
    ||||||||||| ||||||||||||||||||||       ||||||||||||| ||| | ||||||||||||||||||||||||    
T  35965577 aaaatgatatttgtacaaccactttattacaatttttt-gacaactttctctttcatactcacattatattcttattctttct 35965658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 42554779 - 42554855
Alignment:
Q  151 aaatgatatt-gtacaaccactttattacaannnnnnngacaactttctctctcacattcacattatattcttattct 227  Q
    |||||||||| ||||||||||||||||||||        |||||||||||||||| | ||||||||||||||||||||    
T  42554779 aaatgatatttgtacaaccactttattacaactttttt-acaactttctctctcatactcacattatattcttattct 42554855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 13711101 - 13711144
Alignment:
Q  188 gacaactttctctctcacattcacattatattcttattctttct 231  Q
    ||||||||||||||||| | |||||||||| |||||||||||||    
T  13711101 gacaactttctctctcatactcacattatactcttattctttct 13711144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 38600854 - 38600897
Alignment:
Q  188 gacaactttctctctcacattcacattatattcttattctttct 231  Q
    ||||||||||||||||| | |||||||||||||||| |||||||    
T  38600854 gacaactttctctctcatactcacattatattcttaatctttct 38600897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 42665843 - 42665804
Alignment:
Q  188 gacaactttctctctcacattcacattatattcttattct 227  Q
    ||||||||||||||||| | ||||||||||||||||||||    
T  42665843 gacaactttctctctcatactcacattatattcttattct 42665804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Complemental strand, 9449445 - 9449411
Alignment:
Q  189 acaactttctctctcacattcacattatattctta 223  Q
    |||||||||||||||| ||||||||||||||||||    
T  9449445 acaactttctctctcatattcacattatattctta 9449411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 231
Target Start/End: Complemental strand, 11828850 - 11828808
Alignment:
Q  189 acaactttctctctcacattcacattatattcttattctttct 231  Q
    |||||||||||||||| |||||| |||| ||||||||||||||    
T  11828850 acaactttctctctcatattcacgttatcttcttattctttct 11828808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 227
Target Start/End: Complemental strand, 45202162 - 45202124
Alignment:
Q  189 acaactttctctctcacattcacattatattcttattct 227  Q
    |||||||||||||||| ||||||||||| ||||||||||    
T  45202162 acaactttctctctcatattcacattatcttcttattct 45202124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 216
Target Start/End: Original strand, 29349546 - 29349574
Alignment:
Q  188 gacaactttctctctcacattcacattat 216  Q
    |||||||||||||||||||||||||||||    
T  29349546 gacaactttctctctcacattcacattat 29349574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 39744624 - 39744588
Alignment:
Q  189 acaactttctctctcacattcacattatattcttatt 225  Q
    |||||||||||||||| |||||||||| |||||||||    
T  39744624 acaactttctctctcatattcacattacattcttatt 39744588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 42251948 - 42251912
Alignment:
Q  191 aactttctctctcacattcacattatattcttattct 227  Q
    |||||||||||||| |||||||||||||| |||||||    
T  42251948 aactttctctctcatattcacattatatttttattct 42251912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 43900825 - 43900749
Alignment:
Q  151 aaatgatatt-gtacaaccactttattacaannnnnnngacaactttctctctcacattcacattatattcttattct 227  Q
    |||||||||| ||||||||||||||||||||       ||||||||||||||||| | ||||||||||||||||||||    
T  43900825 aaatgatatttgtacaaccactttattacaacttttt-gacaactttctctctcatactcacattatattcttattct 43900749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 8868912 - 8868955
Alignment:
Q  188 gacaactttctctctcacattcacattatattcttattctttct 231  Q
    ||||||||||||||||| | |||||||||||||||| |||||||    
T  8868912 gacaactttctctctcatactcacattatattcttactctttct 8868955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 22153904 - 22153943
Alignment:
Q  188 gacaactttctctctcacattcacattatattcttattct 227  Q
    ||||||||||||||||| | ||||||||||||||||||||    
T  22153904 gacaactttctctctcatactcacattatattcttattct 22153943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 227
Target Start/End: Original strand, 1834547 - 1834585
Alignment:
Q  189 acaactttctctctcacattcacattatattcttattct 227  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  1834547 acaactttctctctcatactcacattatattcttattct 1834585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 227
Target Start/End: Original strand, 3484800 - 3484838
Alignment:
Q  189 acaactttctctctcacattcacattatattcttattct 227  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  3484800 acaactttctctctcatactcacattatattcttattct 3484838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 227
Target Start/End: Complemental strand, 29846921 - 29846883
Alignment:
Q  189 acaactttctctctcacattcacattatattcttattct 227  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  29846921 acaactttctctctcatactcacattatattcttattct 29846883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 225
Target Start/End: Original strand, 37323707 - 37323744
Alignment:
Q  188 gacaactttctctctcacattcacattatattcttatt 225  Q
    ||||||||||||||| | ||||||||||||||||||||    
T  37323707 gacaactttctctcttatattcacattatattcttatt 37323744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 225
Target Start/End: Complemental strand, 52678608 - 52678571
Alignment:
Q  188 gacaactttctctctcacattcacattatattcttatt 225  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  52678608 gacaactttctctttcatattcacattatattcttatt 52678571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 7245 - 7209
Alignment:
Q  188 gacaactttctctctcacattcacattatattcttat 224  Q
    ||||||||||||||||| | |||||||||||||||||    
T  7245 gacaactttctctctcatactcacattatattcttat 7209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 622491 - 622451
Alignment:
Q  188 gacaactttctctctcacattcacattatattcttattctt 228  Q
    ||||||||||||||||| | |||||||||||| ||||||||    
T  622491 gacaactttctctctcatactcacattatatttttattctt 622451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 11068428 - 11068504
Alignment:
Q  151 aaatgatatt-gtacaaccactttattacaannnnnnngacaactttctctctcacattcacattatattcttattct 227  Q
    |||||||||| ||||||||||||||||||||       |||||||||||||||||  |||||||||||||||||||||    
T  11068428 aaatgatatttgtacaaccactttattacaatttttt-gacaactttctctctcatgttcacattatattcttattct 11068504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 227
Target Start/End: Original strand, 15059641 - 15059719
Alignment:
Q  150 aaaatgatatt-gtacaaccactttattacaannnnnnngacaactttctctctcacattcacattatattcttattct 227  Q
    ||||||||||| ||||||||| ||||||||||       ||||||||||||||||| | |||||||||||| |||||||    
T  15059641 aaaatgatatttgtacaaccattttattacaaaatttttgacaactttctctctcatactcacattatatttttattct 15059719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 223
Target Start/End: Complemental strand, 12489612 - 12489577
Alignment:
Q  188 gacaactttctctctcacattcacattatattctta 223  Q
    ||||||||||||||||| ||||||||||||||||||    
T  12489612 gacaactttctctctcatattcacattatattctta 12489577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 18541082 - 18541043
Alignment:
Q  188 gacaactttctctctcacattcacattatattcttattct 227  Q
    ||||||||||||||||| ||||||||||| ||||||||||    
T  18541082 gacaactttctctctcatattcacattatcttcttattct 18541043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 30196754 - 30196793
Alignment:
Q  188 gacaactttctctctcacattcacattatattcttattct 227  Q
    ||||||||||||||||| | ||||||||||||||||||||    
T  30196754 gacaactttctctctcatactcacattatattcttattct 30196793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 39815386 - 39815425
Alignment:
Q  188 gacaactttctctctcacattcacattatattcttattct 227  Q
    ||||||||||||||||| | ||||||||||||||||||||    
T  39815386 gacaactttctctctcatactcacattatattcttattct 39815425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 45470871 - 45470832
Alignment:
Q  188 gacaactttctctctcacattcacattatattcttattct 227  Q
    ||||||||||||||||| |||||||||||||| |||||||    
T  45470871 gacaactttctctctcatattcacattatatttttattct 45470832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 49596275 - 49596314
Alignment:
Q  188 gacaactttctctctcacattcacattatattcttattct 227  Q
    ||||||||||||||||| | ||||||||||||||||||||    
T  49596275 gacaactttctctctcatactcacattatattcttattct 49596314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 225
Target Start/End: Complemental strand, 30530467 - 30530393
Alignment:
Q  151 aaatgatatt-gtacaaccactttattacaannnnnnngacaactttctctctcacattcacattatattcttatt 225  Q
    |||||||||| ||||||||||||||||||||        |||||||||||||||| | ||||||||||||||||||    
T  30530467 aaatgatatttgtacaaccactttattacaacttttta-acaactttctctctcatactcacattatattcttatt 30530393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 227
Target Start/End: Original strand, 48256948 - 48256986
Alignment:
Q  189 acaactttctctctcacattcacattatattcttattct 227  Q
    |||||||||||||||| ||||||||||| ||||||||||    
T  48256948 acaactttctctctcatattcacattatcttcttattct 48256986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 216
Target Start/End: Original strand, 18434835 - 18434863
Alignment:
Q  188 gacaactttctctctcacattcacattat 216  Q
    |||||||||||||||||||||||||||||    
T  18434835 gacaactttctctctcacattcacattat 18434863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 216
Target Start/End: Original strand, 26967251 - 26967279
Alignment:
Q  188 gacaactttctctctcacattcacattat 216  Q
    |||||||||||||||||||||||||||||    
T  26967251 gacaactttctctctcacattcacattat 26967279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 48576533 - 48576497
Alignment:
Q  191 aactttctctctcacattcacattatattcttattct 227  Q
    |||||||||||||| |||| |||||||||||||||||    
T  48576533 aactttctctctcatattcgcattatattcttattct 48576497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 225
Target Start/End: Original strand, 199269 - 199343
Alignment:
Q  151 aaatgatatt-gtacaaccactttattacaannnnnnngacaactttctctctcacattcacattatattcttatt 225  Q
    |||||||||| ||||||||||||||||||||       ||||||||||||||||| | ||||||||||||||||||    
T  199269 aaatgatatttgtacaaccactttattacaatttttt-gacaactttctctctcatactcacattatattcttatt 199343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 34952474 - 34952398
Alignment:
Q  151 aaatgatatt-gtacaaccactttattacaannnnnnngacaactttctctctcacattcacattatattcttattct 227  Q
    |||||||||| ||||||||||||||||||||        |||||||||||||||| |||||||||||||| |||||||    
T  34952474 aaatgatatttgtacaaccactttattacaacattttc-acaactttctctctcatattcacattatatttttattct 34952398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 2117655 - 2117616
Alignment:
Q  188 gacaactttctctctcacattcacattatattcttattct 227  Q
    ||||||||||||||||| | ||||||||||||||||||||    
T  2117655 gacaactttctctctcatactcacattatattcttattct 2117616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 33910119 - 33910080
Alignment:
Q  188 gacaactttctctctcacattcacattatattcttattct 227  Q
    ||||||||||||||||| | ||||||||||||||||||||    
T  33910119 gacaactttctctctcatactcacattatattcttattct 33910080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 40566248 - 40566209
Alignment:
Q  188 gacaactttctctctcacattcacattatattcttattct 227  Q
    |||||||||| |||||| ||||||||||||||||||||||    
T  40566248 gacaactttcactctcatattcacattatattcttattct 40566209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 227
Target Start/End: Complemental strand, 8725452 - 8725414
Alignment:
Q  189 acaactttctctctcacattcacattatattcttattct 227  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  8725452 acaactttctctctcatactcacattatattcttattct 8725414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 29803266 - 29803300
Alignment:
Q  189 acaactttctctctcacattcacattatattctta 223  Q
    |||||||||||||||| ||||||||||||||||||    
T  29803266 acaactttctctctcatattcacattatattctta 29803300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 227
Target Start/End: Complemental strand, 31025035 - 31024997
Alignment:
Q  189 acaactttctctctcacattcacattatattcttattct 227  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  31025035 acaactttctctctcatactcacattatattcttattct 31024997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 231
Target Start/End: Complemental strand, 32682159 - 32682117
Alignment:
Q  189 acaactttctctctcacattcacattatattcttattctttct 231  Q
    |||| ||||||||||| |||||||||||||| |||||||||||    
T  32682159 acaattttctctctcatattcacattatatttttattctttct 32682117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 225
Target Start/End: Original strand, 5996707 - 5996744
Alignment:
Q  188 gacaactttctctctcacattcacattatattcttatt 225  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  5996707 gacaattttctctctcatattcacattatattcttatt 5996744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 221
Target Start/End: Original strand, 19437298 - 19437330
Alignment:
Q  189 acaactttctctctcacattcacattatattct 221  Q
    |||||||||||||||| ||||||||||||||||    
T  19437298 acaactttctctctcatattcacattatattct 19437330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 19981428 - 19981464
Alignment:
Q  195 ttctctctcacattcacattatattcttattctttct 231  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  19981428 ttctctctcatattcacattatcttcttattctttct 19981464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 46912867 - 46912791
Alignment:
Q  151 aaatgatatt-gtacaaccactttattacaannnnnnngacaactttctctctcacattcacattatattcttattct 227  Q
    |||||||||| ||||||||||||||||||||        |||||||||||||||| | ||||||||||||||||||||    
T  46912867 aaatgatatttgtacaaccactttattacaatttttta-acaactttctctctcatactcacattatattcttattct 46912791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 4511854 - 4511893
Alignment:
Q  188 gacaactttctctctcacattcacattatattcttattct 227  Q
    ||||||||||||||||| | ||||||||||||||||||||    
T  4511854 gacaactttctctctcatactcacattatattcttattct 4511893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 17363270 - 17363309
Alignment:
Q  188 gacaactttctctctcacattcacattatattcttattct 227  Q
    ||||||||||||||||| | ||||||||||||||||||||    
T  17363270 gacaactttctctctcatactcacattatattcttattct 17363309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 36081839 - 36081878
Alignment:
Q  188 gacaactttctctctcacattcacattatattcttattct 227  Q
    ||||||||||||||||| | ||||||||||||||||||||    
T  36081839 gacaactttctctctcatactcacattatattcttattct 36081878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 227
Target Start/End: Complemental strand, 1688458 - 1688420
Alignment:
Q  189 acaactttctctctcacattcacattatattcttattct 227  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  1688458 acaactttctctctcatactcacattatattcttattct 1688420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 227
Target Start/End: Complemental strand, 7161555 - 7161517
Alignment:
Q  189 acaactttctctctcacattcacattatattcttattct 227  Q
    |||||||||||||||| |||||||||||| |||||||||    
T  7161555 acaactttctctctcatattcacattatactcttattct 7161517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 227
Target Start/End: Original strand, 27384217 - 27384255
Alignment:
Q  189 acaactttctctctcacattcacattatattcttattct 227  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  27384217 acaactttctctctcatattcatattatattcttattct 27384255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 11493222 - 11493182
Alignment:
Q  191 aactttctctctcacattcacattatattcttattctttct 231  Q
    |||||||||||||| | | ||||||||||||||||||||||    
T  11493222 aactttctctctcatactaacattatattcttattctttct 11493182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 35332749 - 35332785
Alignment:
Q  191 aactttctctctcacattcacattatattcttattct 227  Q
    |||||||||||||| | ||||||||||||||||||||    
T  35332749 aactttctctctcatactcacattatattcttattct 35332785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 21037265 - 21037222
Alignment:
Q  188 gacaactttctctctcacattcacattatattcttattctttct 231  Q
    ||||||||||||||| | | ||||||||||||||||||||||||    
T  21037265 gacaactttctctcttatactcacattatattcttattctttct 21037222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 223
Target Start/End: Original strand, 26123407 - 26123442
Alignment:
Q  188 gacaactttctctctcacattcacattatattctta 223  Q
    ||||||||||||||||| ||||||||||||||||||    
T  26123407 gacaactttctctctcatattcacattatattctta 26123442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 36186907 - 36186868
Alignment:
Q  188 gacaactttctctctcacattcacattatattcttattct 227  Q
    ||||||||||||||||| | ||||||||||||||||||||    
T  36186907 gacaactttctctctcatactcacattatattcttattct 36186868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 223
Target Start/End: Complemental strand, 47905147 - 47905112
Alignment:
Q  188 gacaactttctctctcacattcacattatattctta 223  Q
    ||||||||||||||||||| ||||||||||||||||    
T  47905147 gacaactttctctctcacactcacattatattctta 47905112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 227
Target Start/End: Original strand, 7295492 - 7295530
Alignment:
Q  189 acaactttctctctcacattcacattatattcttattct 227  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  7295492 acaactttctctctcatactcacattatattcttattct 7295530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 5724050 - 5724115
Alignment:
Q  159 ttgtacaaccactttattacaannnnnnngacaactttctctctcacattcacattatattcttatt 225  Q
    ||||||||||||||||||||||        |||||||||||||||| | ||||||||||||||||||    
T  5724050 ttgtacaaccactttattacaacttttta-acaactttctctctcatactcacattatattcttatt 5724115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 11785395 - 11785434
Alignment:
Q  188 gacaactttctctctcacattcacattatattcttattct 227  Q
    ||||||||||| ||||| ||||||||||||||||||||||    
T  11785395 gacaactttctatctcatattcacattatattcttattct 11785434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 23633354 - 23633315
Alignment:
Q  188 gacaactttctctctcacattcacattatattcttattct 227  Q
    ||||||||||||||||| | ||||||||||||||||||||    
T  23633354 gacaactttctctctcatactcacattatattcttattct 23633315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 227
Target Start/End: Original strand, 7693356 - 7693394
Alignment:
Q  189 acaactttctctctcacattcacattatattcttattct 227  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  7693356 acaactttctctctcatactcacattatattcttattct 7693394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 227
Target Start/End: Complemental strand, 30253343 - 30253305
Alignment:
Q  189 acaactttctctctcacattcacattatattcttattct 227  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  30253343 acaactttctctctcatactcacattatattcttattct 30253305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 225
Target Start/End: Original strand, 14094951 - 14094988
Alignment:
Q  188 gacaactttctctctcacattcacattatattcttatt 225  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  14094951 gacaactttctctctcatactcacattatattcttatt 14094988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 7304155 - 7304115
Alignment:
Q  189 acaactttctctctcacattcacattatattcttattcttt 229  Q
    |||||||||||||||| ||| ||||||| ||||||||||||    
T  7304155 acaactttctctctcatatttacattatcttcttattcttt 7304115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 226
Target Start/End: Complemental strand, 263725 - 263688
Alignment:
Q  189 acaactttctctctcacattcacattatattcttattc 226  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  263725 acaactttctctctcatattcatattatattcttattc 263688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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