View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11698_low_23 (Length: 229)
Name: NF11698_low_23
Description: NF11698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11698_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 7242171 - 7242362
Alignment:
| Q |
12 |
atgaaaaaccatttagcatatggtaaaagtggaacgtctgaactaatccacgtcctagtcgttgtccttgtgattctgttatccaaaaacctcggtacaa |
111 |
Q |
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| T |
7242171 |
atgaaaaaccatttagcatatggtaaaagtggaacgtctgaactaatccacgtcctagtcgttgtccttgtgattctgttatccaaaaacctcggtacaa |
7242270 |
T |
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| Q |
112 |
tgacattagcctccacggtgtcttttctgtgcttctttacggcggcattaataggtccgcaaagattctttatactttgaagaatggaattt |
203 |
Q |
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| T |
7242271 |
tgacattagcctccacggtgtcttttctgtgcttctttacggcggcattaataggtctgcaaagattctttatactttgaagaatggaattt |
7242362 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 48730891 - 48730825
Alignment:
| Q |
15 |
aaaaaccatttagcatatggtaaaagtggaacgtctgaactaatccacgtcctagtcgttgtccttg |
81 |
Q |
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| T |
48730891 |
aaaaaccatttagcataaggtaataatggaacttctgagctaacccacatcctagttggtgtccttg |
48730825 |
T |
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