View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11698_low_24 (Length: 226)
Name: NF11698_low_24
Description: NF11698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11698_low_24 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 37634460 - 37634677
Alignment:
| Q |
9 |
agcataggtgaagcgggaccttttccgttggtgtaacgaacaataccctttccaagtagattgtacttggtcatacgggtggaggcaatcatgtaatagt |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37634460 |
agcacaggtgaagcgggaccttttccgttggtgtaacgaacaataccctttccaagtagattgtacttggtcatacgggtggaggcaatcatgtaatagt |
37634559 |
T |
|
| Q |
109 |
cccttggctctttatcggcggtcacgaggacagtgtagcattgtccaacgtgaacgtcaagagagtcataaacagattgaacaacgtgtgatccttcggt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37634560 |
cccttggctctttatcggcggtcacgaggacagtgtagcattgtccaacgtgaacgtcaagagagtcataaacattttgaacaacgtgtgatccttcggt |
37634659 |
T |
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| Q |
209 |
ttcaaccaacttcattcc |
226 |
Q |
| |
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|||||||||||||||||| |
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| T |
37634660 |
ttcaaccaacttcattcc |
37634677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 37637374 - 37637591
Alignment:
| Q |
9 |
agcataggtgaagcgggaccttttccgttggtgtaacgaacaataccctttccaagtagattgtacttggtcatacgggtggaggcaatcatgtaatagt |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37637374 |
agcacaggtgaagcgggaccttttccgttggtgtaacgaacaataccctttccaagtagattgtacttggtcatacgggtggaggcaatcatgtaatagt |
37637473 |
T |
|
| Q |
109 |
cccttggctctttatcggcggtcacgaggacagtgtagcattgtccaacgtgaacgtcaagagagtcataaacagattgaacaacgtgtgatccttcggt |
208 |
Q |
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| T |
37637474 |
cccttggctctttatcggcggtcacgaggacagtgtagcattgtccaacgtgaacgtcaagagagtcataaacattttgaacaacgtgtgatccttcggt |
37637573 |
T |
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| Q |
209 |
ttcaaccaacttcattcc |
226 |
Q |
| |
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|||||||||||||||||| |
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| T |
37637574 |
ttcaaccaacttcattcc |
37637591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 37645662 - 37645879
Alignment:
| Q |
9 |
agcataggtgaagcgggaccttttccgttggtgtaacgaacaataccctttccaagtagattgtacttggtcatacgggtggaggcaatcatgtaatagt |
108 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37645662 |
agcaaaggtgaagcgggaccttttccgttggtgtaacgaacaataccctttccaactagattgtacttggtcatacgggtggaggcaatcatgtaatagt |
37645761 |
T |
|
| Q |
109 |
cccttggctctttatcggcggtcacgaggacagtgtagcattgtccaacgtgaacgtcaagagagtcataaacagattgaacaacgtgtgatccttcggt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37645762 |
cccttggctctttatcggcggtcacgaggacagtgtagcattgtccaacgtgaacgtcaagagagtcataaacattttgaacaacgtgtgatccttcggt |
37645861 |
T |
|
| Q |
209 |
ttcaaccaacttcattcc |
226 |
Q |
| |
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|||||||||||||||||| |
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| T |
37645862 |
ttcaaccaacttcattcc |
37645879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 37640288 - 37640505
Alignment:
| Q |
9 |
agcataggtgaagcgggaccttttccgttggtgtaacgaacaataccctttccaagtagattgtacttggtcatacgggtggaggcaatcatgtaatagt |
108 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37640288 |
agcacaggtgaagcgggaccttttccgttggtgtaacgtataataccctttccaagtagattgtacttggtcatacgggtggaggcaatcatgtaatagt |
37640387 |
T |
|
| Q |
109 |
cccttggctctttatcggcggtcacgaggacagtgtagcattgtccaacgtgaacgtcaagagagtcataaacagattgaacaacgtgtgatccttcggt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37640388 |
cccttggctctttatcggcggtcacgaggacagtgtagcattgtccaacgtgaacgtcaagagagtcataaacattttgaacaacgtgtgatccttcggt |
37640487 |
T |
|
| Q |
209 |
ttcaaccaacttcattcc |
226 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
37640488 |
ttcaaccaacttcattcc |
37640505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 37648575 - 37648792
Alignment:
| Q |
9 |
agcataggtgaagcgggaccttttccgttggtgtaacgaacaataccctttccaagtagattgtacttggtcatacgggtggaggcaatcatgtaatagt |
108 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37648575 |
agcacaggtgaagcgggaccttttccgttggtgtaacgtataataccctttccaagtagattgtacttggtcatacgggtggaggcaatcatgtaatagt |
37648674 |
T |
|
| Q |
109 |
cccttggctctttatcggcggtcacgaggacagtgtagcattgtccaacgtgaacgtcaagagagtcataaacagattgaacaacgtgtgatccttcggt |
208 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37648675 |
cccttggctctttatcggcggtcacgaggacagtgtagcattgtccaacgtgaacgtcaagagagtcataaacattttgaacaacgtgtgatccttcggt |
37648774 |
T |
|
| Q |
209 |
ttcaaccaacttcattcc |
226 |
Q |
| |
|
|||||||||||||||||| |
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| T |
37648775 |
ttcaaccaacttcattcc |
37648792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 37651487 - 37651704
Alignment:
| Q |
9 |
agcataggtgaagcgggaccttttccgttggtgtaacgaacaataccctttccaagtagattgtacttggtcatacgggtggaggcaatcatgtaatagt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
37651487 |
agcataggtgaagcgggaccttttccgttggtgtaacgtataataccctttccaagtagattgtacttggtcatacgggtggaggcaaccatgtaatagt |
37651586 |
T |
|
| Q |
109 |
cccttggctctttatcggcggtcacgaggacagtgtagcattgtccaacgtgaacgtcaagagagtcataaacagattgaacaacgtgtgatccttcggt |
208 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||| ||||||||| ||||| ||||| || |
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| T |
37651587 |
cctttggctctttatcggcggtcacgaggacagtgtagcattgcccaacatgaacgtcgagagagtcatagacattttgaacaacatgtgagccttcagt |
37651686 |
T |
|
| Q |
209 |
ttcaaccaacttcattcc |
226 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
37651687 |
ttcaaccaacttcattcc |
37651704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 32387929 - 32387981
Alignment:
| Q |
129 |
gtcacgaggacagtgtagcattgtccaacgtgaacgtcaagagagtcataaac |
181 |
Q |
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||||||||||||| | |||||||||| |||||||||||||| || |||||||| |
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| T |
32387929 |
gtcacgaggacagagaagcattgtcctacgtgaacgtcaagggaatcataaac |
32387981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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